3D structure

PDB id
7NWG (explore in PDB, NAKB, or RNA 3D Hub)
Description
Mammalian pre-termination 80S ribosome with Hybrid P/E- and A/P-site tRNA's bound by Blasticidin S.
Experimental method
ELECTRON MICROSCOPY
Resolution
3.8 Å

Loop

Sequence
CAAAGU*AGC*GUGGGCC*GGCGCUGC*GAACGC*GCCGUCGCUGG*CCGCGACGAGUAG
Length
54 nucleotides
Bulged bases
7NWG|1|51|G|1854, 7NWG|1|51|U|2084
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

7NWG|1|51|C|1666
7NWG|1|51|A|1667
7NWG|1|51|A|1668
7NWG|1|51|A|1669
7NWG|1|51|G|1670
7NWG|1|51|U|1671
*
7NWG|1|51|A|1684
7NWG|1|51|G|1685
7NWG|1|51|C|1686
*
7NWG|1|51|G|1851
7NWG|1|51|U|1852
7NWG|1|51|G|1853
7NWG|1|51|G|1854
7NWG|1|51|G|1855
7NWG|1|51|C|1856
7NWG|1|51|C|1857
*
7NWG|1|51|G|1877
7NWG|1|51|G|1878
7NWG|1|51|C|1879
7NWG|1|51|G|1880
7NWG|1|51|C|1881
7NWG|1|51|U|1882
7NWG|1|51|G|1883
7NWG|1|51|C|1884
*
7NWG|1|51|G|1895
7NWG|1|51|A|1896
7NWG|1|51|A|1897
7NWG|1|51|C|1898
7NWG|1|51|G|1899
7NWG|1|51|C|1900
*
7NWG|1|51|G|2076
7NWG|1|51|C|2077
7NWG|1|51|C|2078
7NWG|1|51|G|2079
7NWG|1|51|U|2080
7NWG|1|51|C|2081
7NWG|1|51|G|2082
7NWG|1|51|C|2083
7NWG|1|51|U|2084
7NWG|1|51|G|2085
7NWG|1|51|G|2086
*
7NWG|1|51|C|2271
7NWG|1|51|C|2272
7NWG|1|51|G|2273
7NWG|1|51|C|2274
7NWG|1|51|G|2275
7NWG|1|51|A|2276
7NWG|1|51|C|2277
7NWG|1|51|G|2278
7NWG|1|51|A|2279
7NWG|1|51|G|2280
7NWG|1|51|U|2281
7NWG|1|51|A|2282
7NWG|1|51|G|2283

Current chains

Chain 51
28S Ribosomal RNA

Nearby chains

Chain 71
5S ribosomal RNA; 5S rRNA
Chain C3
uL4
Chain F3
uL30
Chain L3
L13
Chain Q3
L18
Chain T3
eL21
Chain a3
uL15
Chain b3
eL29
Chain e3
eL32
Chain f3
eL33

Coloring options:

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