3D structure

PDB id
7OSM (explore in PDB, NAKB, or RNA 3D Hub)
Description
Intermediate translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands
Experimental method
X-RAY DIFFRACTION
Resolution
3 Å

Loop

Sequence
CGAAGUUU*AUAG*UGGG*CGAUGC*GAACG*CC*GAGUAG
Length
35 nucleotides
Bulged bases
7OSM|1|25S|G|1116
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

7OSM|1|25S|C|949
7OSM|1|25S|G|950
7OSM|1|25S|A|951
7OSM|1|25S|A|952
7OSM|1|25S|G|953
7OSM|1|25S|U|954
7OSM|1|25S|U|955
7OSM|1|25S|U|956
*
7OSM|1|25S|A|965
7OSM|1|25S|U|966
7OSM|1|25S|A|967
7OSM|1|25S|G|968
*
7OSM|1|25S|U|1114
7OSM|1|25S|G|1115
7OSM|1|25S|G|1116
7OSM|1|25S|G|1117
*
7OSM|1|25S|C|1141
7OSM|1|25S|G|1142
7OSM|1|25S|A|1143
7OSM|1|25S|U|1144
7OSM|1|25S|G|1145
7OSM|1|25S|C|1146
*
7OSM|1|25S|G|1157
7OSM|1|25S|A|1158
7OSM|1|25S|A|1159
7OSM|1|25S|C|1160
7OSM|1|25S|G|1161
*
7OSM|1|25S|C|1338
7OSM|1|25S|C|1339
*
7OSM|1|25S|G|1365
7OSM|1|25S|A|1366
7OSM|1|25S|G|1367
7OSM|1|25S|U|1368
7OSM|1|25S|A|1369
7OSM|1|25S|G|1370

Current chains

Chain 25S
25S rRNA

Nearby chains

Chain AB
5S ribosomal RNA; 5S rRNA
Chain eL13
60S ribosomal protein L13
Chain eL18
BJ4_G0033900.mRNA.1.CDS.1
Chain eL21
BJ4_G0003770.mRNA.1.CDS.1
Chain eL29
60S ribosomal protein L29
Chain eL32
HN1_G0013350.mRNA.1.CDS.1
Chain eL33
BJ4_G0025510.mRNA.1.CDS.1
Chain uL15
60S ribosomal protein L28
Chain uL30
60S ribosomal protein L7-A
Chain uL4
BJ4_G0008850.mRNA.1.CDS.1

Coloring options:

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