J7_7OYD_001
3D structure
- PDB id
- 7OYD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a rabbit 80S ribosome with zebrafish Dap1b
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.3 Å
Loop
- Sequence
- CAAAGU*AG*UGGG*CGCU(OMG)C*GAACG*CC*GAGUAG
- Length
- 31 nucleotides
- Bulged bases
- 7OYD|1|5|G|1858
- QA status
- Modified nucleotides: OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
7OYD|1|5|C|1670
7OYD|1|5|A|1671
7OYD|1|5|A|1672
7OYD|1|5|A|1673
7OYD|1|5|G|1674
7OYD|1|5|U|1675
*
7OYD|1|5|A|1688
7OYD|1|5|G|1689
*
7OYD|1|5|U|1856
7OYD|1|5|G|1857
7OYD|1|5|G|1858
7OYD|1|5|G|1859
*
7OYD|1|5|C|1883
7OYD|1|5|G|1884
7OYD|1|5|C|1885
7OYD|1|5|U|1886
7OYD|1|5|OMG|1887
7OYD|1|5|C|1888
*
7OYD|1|5|G|1899
7OYD|1|5|A|1900
7OYD|1|5|A|1901
7OYD|1|5|C|1902
7OYD|1|5|G|1903
*
7OYD|1|5|C|2081
7OYD|1|5|C|2082
*
7OYD|1|5|G|2282
7OYD|1|5|A|2283
7OYD|1|5|G|2284
7OYD|1|5|U|2285
7OYD|1|5|A|2286
7OYD|1|5|G|2287
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain C
- 60S ribosomal protein L4
- Chain F
- uL30
- Chain K
- 5S ribosomal RNA; 5S rRNA
- Chain L
- L13
- Chain Q
- RPL18
- Chain T
- eL21
- Chain a
- uL15
- Chain b
- 60S ribosomal protein L29
- Chain e
- eL32
- Chain f
- eL33
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