J7_7PIR_001
3D structure
- PDB id
- 7PIR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome with A*- and P/E-site tRNAs in pseudouridimycin-treated Mycoplasma pneumoniae cells
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 12.1 Å
Loop
- Sequence
- GUG*CGUGC*GAG*CAUGAGUAACGCUU*AAACC*GGUUAGC*GGUGAAAUCC
- Length
- 47 nucleotides
- Bulged bases
- 7PIR|1|3|U|567, 7PIR|1|3|U|595, 7PIR|1|3|G|1301, 7PIR|1|3|G|1681
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
7PIR|1|3|G|566
7PIR|1|3|U|567
7PIR|1|3|G|568
*
7PIR|1|3|C|593
7PIR|1|3|G|594
7PIR|1|3|U|595
7PIR|1|3|G|596
7PIR|1|3|C|597
*
7PIR|1|3|G|610
7PIR|1|3|A|611
7PIR|1|3|G|612
*
7PIR|1|3|C|1291
7PIR|1|3|A|1292
7PIR|1|3|U|1293
7PIR|1|3|G|1294
7PIR|1|3|A|1295
7PIR|1|3|G|1296
7PIR|1|3|U|1297
7PIR|1|3|A|1298
7PIR|1|3|A|1299
7PIR|1|3|C|1300
7PIR|1|3|G|1301
7PIR|1|3|C|1302
7PIR|1|3|U|1303
7PIR|1|3|U|1304
*
7PIR|1|3|A|1322
7PIR|1|3|A|1323
7PIR|1|3|A|1324
7PIR|1|3|C|1325
7PIR|1|3|C|1326
*
7PIR|1|3|G|1676
7PIR|1|3|G|1677
7PIR|1|3|U|1678
7PIR|1|3|U|1679
7PIR|1|3|A|1680
7PIR|1|3|G|1681
7PIR|1|3|C|1682
*
7PIR|1|3|G|2016
7PIR|1|3|G|2017
7PIR|1|3|U|2018
7PIR|1|3|G|2019
7PIR|1|3|A|2020
7PIR|1|3|A|2021
7PIR|1|3|A|2022
7PIR|1|3|U|2023
7PIR|1|3|C|2024
7PIR|1|3|C|2025
Current chains
- Chain 3
- 23S ribosomal RNA
Nearby chains
- Chain c
- 50S ribosomal protein L4
- Chain i
- 50S ribosomal protein L13
- Chain m
- 50S ribosomal protein L17
- Chain p
- 50S ribosomal protein L20
- Chain q
- 50S ribosomal protein L21
- Chain r
- 50S ribosomal protein L22
- Chain y
- 50S ribosomal protein L32
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