J7_7QIW_001
3D structure
- PDB id
- 7QIW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Specific features and methylation sites of a plant ribosome. 60S ribosomal subunit.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.35 Å
Loop
- Sequence
- CGAAGU*AG*UGGG*CGAUGC*GGAAG*CC*G(A2M)GUAG
- Length
- 31 nucleotides
- Bulged bases
- 7QIW|1|2|G|1127
- QA status
- Modified nucleotides: A2M
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
7QIW|1|2|C|959
7QIW|1|2|G|960
7QIW|1|2|A|961
7QIW|1|2|A|962
7QIW|1|2|G|963
7QIW|1|2|U|964
*
7QIW|1|2|A|977
7QIW|1|2|G|978
*
7QIW|1|2|U|1125
7QIW|1|2|G|1126
7QIW|1|2|G|1127
7QIW|1|2|G|1128
*
7QIW|1|2|C|1152
7QIW|1|2|G|1153
7QIW|1|2|A|1154
7QIW|1|2|U|1155
7QIW|1|2|G|1156
7QIW|1|2|C|1157
*
7QIW|1|2|G|1168
7QIW|1|2|G|1169
7QIW|1|2|A|1170
7QIW|1|2|A|1171
7QIW|1|2|G|1172
*
7QIW|1|2|C|1350
7QIW|1|2|C|1351
*
7QIW|1|2|G|1377
7QIW|1|2|A2M|1378
7QIW|1|2|G|1379
7QIW|1|2|U|1380
7QIW|1|2|A|1381
7QIW|1|2|G|1382
Current chains
- Chain 2
- 25S rRNA
Nearby chains
- Chain 5
- 5S ribosomal RNA; 5S rRNA
- Chain F
- Ribos_L4_asso_C domain-containing protein
- Chain I
- Thaliana 60S ribosomal protein L7
- Chain N
- 60S ribosomal protein L13
- Chain S
- Ribosomal_L18e/L15P domain-containing protein
- Chain V
- 60S ribosomal protein eL21
- Chain c
- Putative 60S ribosomal protein L27a-3-like
- Chain d
- 60S ribosomal protein L29
- Chain g
- 60S ribosomal protein eL32
- Chain h
- 60S ribosomal protein eL33
- Chain r
- Ribosomal_L28e domain-containing protein
Coloring options: