Loop J7_7RQB

3D structure

PDB id: 7RQB (explore in PDB, NAKB, or RNA 3D Hub)
Description: Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site aminoacyl-tRNA analog ACC-PMN, and P-site MAI-tripeptidyl-tRNA analog ACCA-IAM at 2.45A resolution
Experimental method: X-RAY DIFFRACTION
Resolution: 2.45 Å

Loop

Sequence: AUGGUAAG*UACAAGC*GAACUG*CUAC*GCGCAG*CC*GU
Length: 35 nucleotides
Bulged bases: 7RQB|1|1A|G|530, 7RQB|1|1A|C|2021
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: J7_30073.1
Basepair signature: cWW-tWW-cWW-F-F-cWW-F-cSH-F-cWW-F-F-F-cWW-F-F-F-tHW-cWW-cWW-F-F-F
Number of instances in this motif group: 1

Unit IDs

7RQB|1|1A|A|8
7RQB|1|1A|U|9
7RQB|1|1A|G|10
7RQB|1|1A|G|11
7RQB|1|1A|U|12
7RQB|1|1A|A|13
7RQB|1|1A|A|14
7RQB|1|1A|G|15
*
7RQB|1|1A|U|525
7RQB|1|1A|A|526
7RQB|1|1A|C|527
7RQB|1|1A|A|528
7RQB|1|1A|A|529
7RQB|1|1A|G|530
7RQB|1|1A|C|531
*
7RQB|1|1A|G|2018
7RQB|1|1A|A|2019
7RQB|1|1A|A|2020
7RQB|1|1A|C|2021
7RQB|1|1A|U|2022
7RQB|1|1A|G|2023
*
7RQB|1|1A|C|2040
7RQB|1|1A|U|2041
7RQB|1|1A|A|2042
7RQB|1|1A|C|2043
*
7RQB|1|1A|G|2625
7RQB|1|1A|C|2626
7RQB|1|1A|G|2627
7RQB|1|1A|C|2628
7RQB|1|1A|A|2629
7RQB|1|1A|G|2630
*
7RQB|1|1A|C|2788
7RQB|1|1A|C|2789
*
7RQB|1|1A|G|2894
7RQB|1|1A|U|2895

Current chains

Chain 1A: 23S Ribosomal RNA

Nearby chains

Chain 15: 50S ribosomal protein L32
Chain 1E: 50S ribosomal protein L3
Chain 1N: 50S ribosomal protein L13
Chain 1U: 50S ribosomal protein L20
Chain 1W: 50S ribosomal protein L22

J7_7RQB_001