J7_7SYH_001
3D structure
- PDB id
- 7SYH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the HCV IRES binding to the 40S ribosomal subunit, closed conformation. Structure 2(delta dII)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.6 Å
Loop
- Sequence
- CAUGUCUAAG*CUGCGAAUGGCUCAUUAAAUC*GCC*GUGAC*GGAGAGG*CACAU*AAGGCAG
- Length
- 58 nucleotides
- Bulged bases
- 7SYH|1|2|U|55, 7SYH|1|2|A|92, 7SYH|1|2|G|407, 7SYH|1|2|C|472
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
7SYH|1|2|C|53
7SYH|1|2|A|54
7SYH|1|2|U|55
7SYH|1|2|G|56
7SYH|1|2|U|57
7SYH|1|2|C|58
7SYH|1|2|U|59
7SYH|1|2|A|60
7SYH|1|2|A|61
7SYH|1|2|G|62
*
7SYH|1|2|C|86
7SYH|1|2|U|87
7SYH|1|2|G|88
7SYH|1|2|C|89
7SYH|1|2|G|90
7SYH|1|2|A|91
7SYH|1|2|A|92
7SYH|1|2|U|93
7SYH|1|2|G|94
7SYH|1|2|G|95
7SYH|1|2|C|96
7SYH|1|2|U|97
7SYH|1|2|C|98
7SYH|1|2|A|99
7SYH|1|2|U|100
7SYH|1|2|U|101
7SYH|1|2|A|102
7SYH|1|2|A|103
7SYH|1|2|A|104
7SYH|1|2|U|105
7SYH|1|2|C|106
*
7SYH|1|2|G|355
7SYH|1|2|C|356
7SYH|1|2|C|357
*
7SYH|1|2|G|405
7SYH|1|2|U|406
7SYH|1|2|G|407
7SYH|1|2|A|408
7SYH|1|2|C|409
*
7SYH|1|2|G|431
7SYH|1|2|G|432
7SYH|1|2|A|433
7SYH|1|2|G|434
7SYH|1|2|A|435
7SYH|1|2|G|436
7SYH|1|2|G|437
*
7SYH|1|2|C|457
7SYH|1|2|A|458
7SYH|1|2|C|459
7SYH|1|2|A|460
7SYH|1|2|U|461
*
7SYH|1|2|A|468
7SYH|1|2|A|469
7SYH|1|2|G|470
7SYH|1|2|G|471
7SYH|1|2|C|472
7SYH|1|2|A|473
7SYH|1|2|G|474
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain F
- 40S ribosomal protein S4
- Chain H
- eS6
- Chain J
- eS8
- Chain K
- uS4
- Chain M
- uS17
- Chain Y
- uS12
- Chain Z
- 40S ribosomal protein S24
Coloring options: