J7_7UPH_001

3D structure

PDB id

7UPH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a ribosome with tethered subunits

Experimental method

ELECTRON MICROSCOPY

Resolution

4.18 Å

Loop

Sequence

GG*CGACUAAG*UACAAGC*GAACUCG*UGUAC*GCGCUG*CC

Length

37 nucleotides

Bulged bases

7UPH|1|I|G|2030, 7UPH|1|I|C|3515

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7UPH|1|I|G|1490
7UPH|1|I|G|1491
*
7UPH|1|I|C|1508
7UPH|1|I|G|1509
7UPH|1|I|A|1510
7UPH|1|I|C|1511
7UPH|1|I|U|1512
7UPH|1|I|A|1513
7UPH|1|I|A|1514
7UPH|1|I|G|1515
*
7UPH|1|I|U|2025
7UPH|1|I|A|2026
7UPH|1|I|C|2027
7UPH|1|I|A|2028
7UPH|1|I|A|2029
7UPH|1|I|G|2030
7UPH|1|I|C|2031
*
7UPH|1|I|G|3512
7UPH|1|I|A|3513
7UPH|1|I|A|3514
7UPH|1|I|C|3515
7UPH|1|I|U|3516
7UPH|1|I|C|3517
7UPH|1|I|G|3518
*
7UPH|1|I|U|3533
7UPH|1|I|G|3534
7UPH|1|I|U|3535
7UPH|1|I|A|3536
7UPH|1|I|C|3537
*
7UPH|1|I|G|4119
7UPH|1|I|C|4120
7UPH|1|I|G|4121
7UPH|1|I|C|4122
7UPH|1|I|U|4123
7UPH|1|I|G|4124
*
7UPH|1|I|C|4282
7UPH|1|I|C|4283

Current chains

Chain I

Tethered rRNA

Nearby chains

Chain L

50S ribosomal protein L3

Chain R

50S ribosomal protein L13

Chain i

50S ribosomal protein L32

Chain p

50S ribosomal protein L20

Chain r

50S ribosomal protein L22