J7_8A5I_002
3D structure
- PDB id
- 8A5I (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of Lincomycin bound to the Listeria monocytogenes 50S ribosomal subunit.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.3 Å
Loop
- Sequence
- CGAAAU*AG*UCAG*CGAAAG*CAGAC*GA*UGGUAG
- Length
- 31 nucleotides
- Bulged bases
- 8A5I|1|A|A|991
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8A5I|1|A|C|863
8A5I|1|A|G|864
8A5I|1|A|A|865
8A5I|1|A|A|866
8A5I|1|A|A|867
8A5I|1|A|U|868
*
8A5I|1|A|A|881
8A5I|1|A|G|882
*
8A5I|1|A|U|989
8A5I|1|A|C|990
8A5I|1|A|A|991
8A5I|1|A|G|992
*
8A5I|1|A|C|1017
8A5I|1|A|G|1018
8A5I|1|A|A|1019
8A5I|1|A|A|1020
8A5I|1|A|A|1021
8A5I|1|A|G|1022
*
8A5I|1|A|C|1033
8A5I|1|A|A|1034
8A5I|1|A|G|1035
8A5I|1|A|A|1036
8A5I|1|A|C|1037
*
8A5I|1|A|G|1209
8A5I|1|A|A|1210
*
8A5I|1|A|U|1231
8A5I|1|A|G|1232
8A5I|1|A|G|1233
8A5I|1|A|U|1234
8A5I|1|A|A|1235
8A5I|1|A|G|1236
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain 3
- 50S ribosomal protein L30
- Chain 8
- 50S ribosomal protein L35
- Chain B
- 5S ribosomal RNA; 5S rRNA
- Chain O
- 50S ribosomal protein L15
- Chain T
- 50S ribosomal protein L20
- Chain U
- 50S ribosomal protein L21
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