J7_8B2L_001
3D structure
- PDB id
- 8B2L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the plant 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- CGAAGU*AG*UGGG*CGAUGC*GGAAG*CC*G(A2M)GUAG
- Length
- 31 nucleotides
- Bulged bases
- 8B2L|1|A3|G|1127
- QA status
- Modified nucleotides: A2M
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8B2L|1|A3|C|959
8B2L|1|A3|G|960
8B2L|1|A3|A|961
8B2L|1|A3|A|962
8B2L|1|A3|G|963
8B2L|1|A3|U|964
*
8B2L|1|A3|A|977
8B2L|1|A3|G|978
*
8B2L|1|A3|U|1125
8B2L|1|A3|G|1126
8B2L|1|A3|G|1127
8B2L|1|A3|G|1128
*
8B2L|1|A3|C|1152
8B2L|1|A3|G|1153
8B2L|1|A3|A|1154
8B2L|1|A3|U|1155
8B2L|1|A3|G|1156
8B2L|1|A3|C|1157
*
8B2L|1|A3|G|1168
8B2L|1|A3|G|1169
8B2L|1|A3|A|1170
8B2L|1|A3|A|1171
8B2L|1|A3|G|1172
*
8B2L|1|A3|C|1350
8B2L|1|A3|C|1351
*
8B2L|1|A3|G|1377
8B2L|1|A3|A2M|1378
8B2L|1|A3|G|1379
8B2L|1|A3|U|1380
8B2L|1|A3|A|1381
8B2L|1|A3|G|1382
Current chains
- Chain A3
- 25S rRNA
Nearby chains
- Chain C3
- 5S ribosomal RNA; 5S rRNA
- Chain D3
- 60S ribosomal protein L13
- Chain G3
- 60S ribosomal protein L18-2-like
- Chain J3
- 60S ribosomal protein L21-1-like
- Chain N3
- eL28 (60S ribosomal protein L28)
- Chain O3
- 60S ribosomal protein L29
- Chain R3
- 60S ribosomal protein L32-1
- Chain S3
- eL33 (60S ribosomal protein L35a)
- Chain f3
- uL15 (60S ribosomal protein L27a)
- Chain q3
- 60S ribosomal protein L7-4-like
- Chain s3
- uL4 (60S ribosomal protein L4)
Coloring options: