J7_8BHF_001
3D structure
- PDB id
- 8BHF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of stalled rabbit 80S ribosomes in complex with human CCR4-NOT and CNOT4
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CAAAGU*AG*UGGG*CGCUGC*GAACG*CC*GAGUAG
- Length
- 31 nucleotides
- Bulged bases
- 8BHF|1|A2|G|1854
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8BHF|1|A2|C|1666
8BHF|1|A2|A|1667
8BHF|1|A2|A|1668
8BHF|1|A2|A|1669
8BHF|1|A2|G|1670
8BHF|1|A2|U|1671
*
8BHF|1|A2|A|1684
8BHF|1|A2|G|1685
*
8BHF|1|A2|U|1852
8BHF|1|A2|G|1853
8BHF|1|A2|G|1854
8BHF|1|A2|G|1855
*
8BHF|1|A2|C|1879
8BHF|1|A2|G|1880
8BHF|1|A2|C|1881
8BHF|1|A2|U|1882
8BHF|1|A2|G|1883
8BHF|1|A2|C|1884
*
8BHF|1|A2|G|1895
8BHF|1|A2|A|1896
8BHF|1|A2|A|1897
8BHF|1|A2|C|1898
8BHF|1|A2|G|1899
*
8BHF|1|A2|C|2077
8BHF|1|A2|C|2078
*
8BHF|1|A2|G|2281
8BHF|1|A2|A|2282
8BHF|1|A2|G|2283
8BHF|1|A2|U|2284
8BHF|1|A2|A|2285
8BHF|1|A2|G|2286
Current chains
- Chain A2
- 28S ribosomal RNA
Nearby chains
- Chain B2
- 5S ribosomal RNA; 5S rRNA
- Chain D1
- Ribosomal protein L18
- Chain G1
- 60S ribosomal protein L21
- Chain N1
- 60S ribosomal protein L27a
- Chain O1
- 60S ribosomal protein L29
- Chain R1
- Ribosomal protein L32
- Chain S1
- 60S ribosomal protein L35a
- Chain l3
- 60S ribosomal protein L4
- Chain o3
- 60S ribosomal protein L7
- Chain t3
- 60S ribosomal protein L13
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