J7_8BQX_001

3D structure

PDB id

8BQX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome in complex with Map1 (conformation 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CGAAGU*AG*UGGG*CGAUGC*GAACG*CC*GAGUAG

Length

31 nucleotides

Bulged bases

8BQX|1|BQ|G|1116

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8BQX|1|BQ|C|949
8BQX|1|BQ|G|950
8BQX|1|BQ|A|951
8BQX|1|BQ|A|952
8BQX|1|BQ|G|953
8BQX|1|BQ|U|954
*
8BQX|1|BQ|A|967
8BQX|1|BQ|G|968
*
8BQX|1|BQ|U|1114
8BQX|1|BQ|G|1115
8BQX|1|BQ|G|1116
8BQX|1|BQ|G|1117
*
8BQX|1|BQ|C|1141
8BQX|1|BQ|G|1142
8BQX|1|BQ|A|1143
8BQX|1|BQ|U|1144
8BQX|1|BQ|G|1145
8BQX|1|BQ|C|1146
*
8BQX|1|BQ|G|1157
8BQX|1|BQ|A|1158
8BQX|1|BQ|A|1159
8BQX|1|BQ|C|1160
8BQX|1|BQ|G|1161
*
8BQX|1|BQ|C|1338
8BQX|1|BQ|C|1339
*
8BQX|1|BQ|G|1365
8BQX|1|BQ|A|1366
8BQX|1|BQ|G|1367
8BQX|1|BQ|U|1368
8BQX|1|BQ|A|1369
8BQX|1|BQ|G|1370

Current chains

Chain BQ

25S rRNA

Nearby chains

Chain AJ

60S ribosomal protein L13-A

Chain AR

60S ribosomal protein L28

Chain AV

60S ribosomal protein L29

Chain BB

60S ribosomal protein L18-A

Chain BE

60S ribosomal protein L4-A

Chain BG

RPL32 isoform 1

Chain BJ

60S ribosomal protein L21-A

Chain BK

60S ribosomal protein L33-A

Chain BO

60S ribosomal protein L7-A

Chain BR

5S ribosomal RNA; 5S rRNA