J7_8C91_001

3D structure

PDB id

8C91 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM captures early ribosome assembly in action

Experimental method

ELECTRON MICROSCOPY

Resolution

4.19 Å

Loop

Sequence

CGACUAAG*UACAAGC*GAACUC*GUAC*GCGCUG*CC*GG

Length

35 nucleotides

Bulged bases

8C91|1|A|U|12, 8C91|1|A|C|2021

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8C91|1|A|C|8
8C91|1|A|G|9
8C91|1|A|A|10
8C91|1|A|C|11
8C91|1|A|U|12
8C91|1|A|A|13
8C91|1|A|A|14
8C91|1|A|G|15
*
8C91|1|A|U|525
8C91|1|A|A|526
8C91|1|A|C|527
8C91|1|A|A|528
8C91|1|A|A|529
8C91|1|A|G|530
8C91|1|A|C|531
*
8C91|1|A|G|2018
8C91|1|A|A|2019
8C91|1|A|A|2020
8C91|1|A|C|2021
8C91|1|A|U|2022
8C91|1|A|C|2023
*
8C91|1|A|G|2040
8C91|1|A|U|2041
8C91|1|A|A|2042
8C91|1|A|C|2043
*
8C91|1|A|G|2625
8C91|1|A|C|2626
8C91|1|A|G|2627
8C91|1|A|C|2628
8C91|1|A|U|2629
8C91|1|A|G|2630
*
8C91|1|A|C|2788
8C91|1|A|C|2789
*
8C91|1|A|G|2894
8C91|1|A|G|2895

Current chains

Chain A

23S rRNA

Nearby chains

Chain 0

50S ribosomal protein L32

Chain D

50S ribosomal protein L3

Chain J

50S ribosomal protein L13

Chain Q

50S ribosomal protein L20

Chain S

50S ribosomal protein L22