3D structure

PDB id
8C94 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM captures early ribosome assembly in action
Experimental method
ELECTRON MICROSCOPY
Resolution
3.8 Å

Loop

Sequence
CGAAAG*CGCC*GAGACAC*GAAGAG*CAGAC*GC*GGGUAG
Length
36 nucleotides
Bulged bases
8C94|1|A|A|945
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

8C94|1|A|C|817
8C94|1|A|G|818
8C94|1|A|A|819
8C94|1|A|A|820
8C94|1|A|A|821
8C94|1|A|G|822
*
8C94|1|A|C|835
8C94|1|A|G|836
8C94|1|A|C|837
8C94|1|A|C|838
*
8C94|1|A|G|940
8C94|1|A|A|941
8C94|1|A|G|942
8C94|1|A|A|943
8C94|1|A|C|944
8C94|1|A|A|945
8C94|1|A|C|946
*
8C94|1|A|G|971
8C94|1|A|A|972
8C94|1|A|A|973
8C94|1|A|G|974
8C94|1|A|A|975
8C94|1|A|G|976
*
8C94|1|A|C|987
8C94|1|A|A|988
8C94|1|A|G|989
8C94|1|A|A|990
8C94|1|A|C|991
*
8C94|1|A|G|1163
8C94|1|A|C|1164
*
8C94|1|A|G|1185
8C94|1|A|G|1186
8C94|1|A|G|1187
8C94|1|A|U|1188
8C94|1|A|A|1189
8C94|1|A|G|1190

Current chains

Chain A
23S rRNA

Nearby chains

Chain B
5S ribosomal RNA; 5S rRNA
Chain L
50S ribosomal protein L15
Chain Q
50S ribosomal protein L20
Chain R
50S ribosomal protein L21
Chain Z
50S ribosomal protein L30

Coloring options:

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