3D structure

PDB id
8FL9 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Human nuclear pre-60S ribosomal subunit (State J3)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.75 Å

Loop

Sequence
CGAAGU*AG*UGGG*CGCUGC*GAACG*CC*GAGUAG
Length
31 nucleotides
Bulged bases
8FL9|1|L3|U|1882
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

8FL9|1|L3|C|1666
8FL9|1|L3|G|1667
8FL9|1|L3|A|1668
8FL9|1|L3|A|1669
8FL9|1|L3|G|1670
8FL9|1|L3|U|1671
*
8FL9|1|L3|A|1684
8FL9|1|L3|G|1685
*
8FL9|1|L3|U|1852
8FL9|1|L3|G|1853
8FL9|1|L3|G|1854
8FL9|1|L3|G|1855
*
8FL9|1|L3|C|1879
8FL9|1|L3|G|1880
8FL9|1|L3|C|1881
8FL9|1|L3|U|1882
8FL9|1|L3|G|1883
8FL9|1|L3|C|1884
*
8FL9|1|L3|G|1895
8FL9|1|L3|A|1896
8FL9|1|L3|A|1897
8FL9|1|L3|C|1898
8FL9|1|L3|G|1899
*
8FL9|1|L3|C|2077
8FL9|1|L3|C|2078
*
8FL9|1|L3|G|2278
8FL9|1|L3|A|2279
8FL9|1|L3|G|2280
8FL9|1|L3|U|2281
8FL9|1|L3|A|2282
8FL9|1|L3|G|2283

Current chains

Chain L3
28S rRNA

Nearby chains

Chain L4
5S ribosomal RNA; 5S rRNA
Chain L6
60S ribosomal protein L13
Chain LB
60S ribosomal protein L18
Chain LE
60S ribosomal protein L21
Chain LK
60S ribosomal protein L27a
Chain LM
60S ribosomal protein L29
Chain LQ
60S ribosomal protein L32
Chain LT
60S ribosomal protein L35a
Chain SA
60S ribosomal protein L4
Chain SD
60S ribosomal protein L7

Coloring options:

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