J7_8HL2_001

3D structure

PDB id

8HL2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structures and Translocation Mechanism of Crenarchaeota Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

CGAAAU*AG*UGGG*CAAAAG*CAGAC*GA*UGGUAG

Length

31 nucleotides

Bulged bases

8HL2|1|A23S|G|1083

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8HL2|1|A23S|C|953
8HL2|1|A23S|G|954
8HL2|1|A23S|A|955
8HL2|1|A23S|A|956
8HL2|1|A23S|A|957
8HL2|1|A23S|U|958
*
8HL2|1|A23S|A|971
8HL2|1|A23S|G|972
*
8HL2|1|A23S|U|1081
8HL2|1|A23S|G|1082
8HL2|1|A23S|G|1083
8HL2|1|A23S|G|1084
*
8HL2|1|A23S|C|1108
8HL2|1|A23S|A|1109
8HL2|1|A23S|A|1110
8HL2|1|A23S|A|1111
8HL2|1|A23S|A|1112
8HL2|1|A23S|G|1113
*
8HL2|1|A23S|C|1124
8HL2|1|A23S|A|1125
8HL2|1|A23S|G|1126
8HL2|1|A23S|A|1127
8HL2|1|A23S|C|1128
*
8HL2|1|A23S|G|1304
8HL2|1|A23S|A|1305
*
8HL2|1|A23S|U|1329
8HL2|1|A23S|G|1330
8HL2|1|A23S|G|1331
8HL2|1|A23S|U|1332
8HL2|1|A23S|A|1333
8HL2|1|A23S|G|1334

Current chains

Chain A23S

23s rRNA (3000-MER)

Nearby chains

Chain A5S

5S ribosomal RNA; 5S rRNA

Chain L15P

50S ribosomal protein L15

Chain L21E

50S ribosomal protein L21e

Chain L30P

50S ribosomal protein L30

Chain L32E

50S ribosomal protein L32e