J7_8K2D_001
3D structure
- PDB id
- 8K2D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the yeast 80S ribosome with tigecycline, eEF2, Stm1 and eIF5A
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- CGAAGU*AG*UGGG*CGAUGC*GAACG*CC*GAGUAG
- Length
- 31 nucleotides
- Bulged bases
- 8K2D|1|C1|G|1116
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8K2D|1|C1|C|949
8K2D|1|C1|G|950
8K2D|1|C1|A|951
8K2D|1|C1|A|952
8K2D|1|C1|G|953
8K2D|1|C1|U|954
*
8K2D|1|C1|A|967
8K2D|1|C1|G|968
*
8K2D|1|C1|U|1114
8K2D|1|C1|G|1115
8K2D|1|C1|G|1116
8K2D|1|C1|G|1117
*
8K2D|1|C1|C|1141
8K2D|1|C1|G|1142
8K2D|1|C1|A|1143
8K2D|1|C1|U|1144
8K2D|1|C1|G|1145
8K2D|1|C1|C|1146
*
8K2D|1|C1|G|1157
8K2D|1|C1|A|1158
8K2D|1|C1|A|1159
8K2D|1|C1|C|1160
8K2D|1|C1|G|1161
*
8K2D|1|C1|C|1338
8K2D|1|C1|C|1339
*
8K2D|1|C1|G|1365
8K2D|1|C1|A|1366
8K2D|1|C1|G|1367
8K2D|1|C1|U|1368
8K2D|1|C1|A|1369
8K2D|1|C1|G|1370
Current chains
- Chain C1
- 23S rRNA
Nearby chains
- Chain C4
- 5S ribosomal RNA; 5S rRNA
- Chain LC
- Large ribosomal subunit protein uL4A
- Chain LF
- Large ribosomal subunit protein uL30A
- Chain LL
- Large ribosomal subunit protein eL13A
- Chain LQ
- Large ribosomal subunit protein eL18A
- Chain LT
- Large ribosomal subunit protein eL21A
- Chain La
- Large ribosomal subunit protein uL15
- Chain Lb
- Large ribosomal subunit protein eL29
- Chain Le
- Large ribosomal subunit protein eL32
- Chain Lf
- Large ribosomal subunit protein eL33A
Coloring options: