J7_8OVE_001
3D structure
- PDB id
- 8OVE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CRYO-EM STRUCTURE OF TRYPANOSOMA BRUCEI PROCYCLIC FORM 80S RIBOSOME : TB11CS6H1 snoRNA mutant
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- CGAAGU*AGC*G(PSU)GGG*CGAUGC*GCUUA*UU*AUGUAG
- Length
- 33 nucleotides
- Bulged bases
- 8OVE|1|BA|G|1250, 8OVE|1|BA|U|1293
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8OVE|1|BA|C|1069
8OVE|1|BA|G|1070
8OVE|1|BA|A|1071
8OVE|1|BA|A|1072
8OVE|1|BA|G|1073
8OVE|1|BA|U|1074
*
8OVE|1|BA|A|1087
8OVE|1|BA|G|1088
8OVE|1|BA|C|1089
*
8OVE|1|BA|G|1247
8OVE|1|BA|PSU|1248
8OVE|1|BA|G|1249
8OVE|1|BA|G|1250
8OVE|1|BA|G|1251
*
8OVE|1|BA|C|1275
8OVE|1|BA|G|1276
8OVE|1|BA|A|1277
8OVE|1|BA|U|1278
8OVE|1|BA|G|1279
8OVE|1|BA|C|1280
*
8OVE|1|BA|G|1291
8OVE|1|BA|C|1292
8OVE|1|BA|U|1293
8OVE|1|BA|U|1294
8OVE|1|BA|A|1295
*
8OVE|1|BA|U|1487
8OVE|1|BA|U|1488
*
8OVE|1|BA|A|1535
8OVE|1|BA|U|1536
8OVE|1|BA|G|1537
8OVE|1|BA|U|1538
8OVE|1|BA|A|1539
8OVE|1|BA|G|1540
Current chains
- Chain BA
- LUS_alpha rRNA
Nearby chains
- Chain BB
- Large subunit ribosomal RNA; LSU rRNA
- Chain BD
- 5S ribosomal RNA; 5S rRNA
- Chain BI
- 60S ribosomal protein L18
- Chain BN
- 60S ribosomal protein L13
- Chain BU
- 60S ribosomal protein L21E, putative
- Chain Bb
- 60S ribosomal protein L27a
- Chain Bd
- 60S ribosomal protein L29
- Chain Bi
- 60S ribosomal protein L32, putative
- Chain Bl
- 60S ribosomal protein L35A, putative
- Chain Bw
- 60S ribosomal protein L7, putative
Coloring options: