J7_8QYX_001
3D structure
- PDB id
- 8QYX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human 60S ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.78 Å
Loop
- Sequence
- CGAAGU*AG*UGGG*CG(OMC)UGC*GAACG*CC*GAGUAG
- Length
- 31 nucleotides
- Bulged bases
- 8QYX|1|A2|G|1854
- QA status
- Modified nucleotides: OMC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8QYX|1|A2|C|1666
8QYX|1|A2|G|1667
8QYX|1|A2|A|1668
8QYX|1|A2|A|1669
8QYX|1|A2|G|1670
8QYX|1|A2|U|1671
*
8QYX|1|A2|A|1684
8QYX|1|A2|G|1685
*
8QYX|1|A2|U|1852
8QYX|1|A2|G|1853
8QYX|1|A2|G|1854
8QYX|1|A2|G|1855
*
8QYX|1|A2|C|1879
8QYX|1|A2|G|1880
8QYX|1|A2|OMC|1881
8QYX|1|A2|U|1882
8QYX|1|A2|G|1883
8QYX|1|A2|C|1884
*
8QYX|1|A2|G|1895
8QYX|1|A2|A|1896
8QYX|1|A2|A|1897
8QYX|1|A2|C|1898
8QYX|1|A2|G|1899
*
8QYX|1|A2|C|2077
8QYX|1|A2|C|2078
*
8QYX|1|A2|G|2278
8QYX|1|A2|A|2279
8QYX|1|A2|G|2280
8QYX|1|A2|U|2281
8QYX|1|A2|A|2282
8QYX|1|A2|G|2283
Current chains
- Chain A2
- 28S rRNA
Nearby chains
- Chain A1
- Large ribosomal subunit protein uL30
- Chain B2
- 5S ribosomal RNA; 5S rRNA
- Chain F1
- 60S ribosomal protein L13
- Chain F2
- 60S ribosomal protein L4
- Chain K1
- 60S ribosomal protein L18
- Chain N1
- 60S ribosomal protein L21
- Chain U1
- Large ribosomal subunit protein uL15
- Chain V1
- 60S ribosomal protein L29
- Chain Y1
- 60S ribosomal protein L32
- Chain Z1
- 60S ribosomal protein L35a
Coloring options: