3D structure

PDB id
8QYX (explore in PDB, NAKB, or RNA 3D Hub)
Description
Human 60S ribosomal subunit
Experimental method
ELECTRON MICROSCOPY
Resolution
1.78 Å

Loop

Sequence
CGAAGU*AG*UGGG*CG(OMC)UGC*GAACG*CC*GAGUAG
Length
31 nucleotides
Bulged bases
8QYX|1|A2|G|1854
QA status
Modified nucleotides: OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

8QYX|1|A2|C|1666
8QYX|1|A2|G|1667
8QYX|1|A2|A|1668
8QYX|1|A2|A|1669
8QYX|1|A2|G|1670
8QYX|1|A2|U|1671
*
8QYX|1|A2|A|1684
8QYX|1|A2|G|1685
*
8QYX|1|A2|U|1852
8QYX|1|A2|G|1853
8QYX|1|A2|G|1854
8QYX|1|A2|G|1855
*
8QYX|1|A2|C|1879
8QYX|1|A2|G|1880
8QYX|1|A2|OMC|1881
8QYX|1|A2|U|1882
8QYX|1|A2|G|1883
8QYX|1|A2|C|1884
*
8QYX|1|A2|G|1895
8QYX|1|A2|A|1896
8QYX|1|A2|A|1897
8QYX|1|A2|C|1898
8QYX|1|A2|G|1899
*
8QYX|1|A2|C|2077
8QYX|1|A2|C|2078
*
8QYX|1|A2|G|2278
8QYX|1|A2|A|2279
8QYX|1|A2|G|2280
8QYX|1|A2|U|2281
8QYX|1|A2|A|2282
8QYX|1|A2|G|2283

Current chains

Chain A2
28S rRNA

Nearby chains

Chain A1
Large ribosomal subunit protein uL30
Chain B2
5S ribosomal RNA; 5S rRNA
Chain F1
60S ribosomal protein L13
Chain F2
60S ribosomal protein L4
Chain K1
60S ribosomal protein L18
Chain N1
60S ribosomal protein L21
Chain U1
Large ribosomal subunit protein uL15
Chain V1
60S ribosomal protein L29
Chain Y1
60S ribosomal protein L32
Chain Z1
60S ribosomal protein L35a

Coloring options:

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