J7_8RXH_001
3D structure
- PDB id
- 8RXH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CRYO-EM STRUCTURE OF LEISHMANIA MAJOR 80S RIBOSOME WITH A/P/E-site tRNA AND mRNA : PARENTAL STRAIN
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.93 Å
Loop
- Sequence
- CGAAGU*AG*(PSU)GGG*CGAUGC*GCUUA*UU*AUGUAG
- Length
- 31 nucleotides
- Bulged bases
- 8RXH|1|L1|G|1173, 8RXH|1|L1|U|1216
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8RXH|1|L1|C|1000
8RXH|1|L1|G|1001
8RXH|1|L1|A|1002
8RXH|1|L1|A|1003
8RXH|1|L1|G|1004
8RXH|1|L1|U|1005
*
8RXH|1|L1|A|1018
8RXH|1|L1|G|1019
*
8RXH|1|L1|PSU|1171
8RXH|1|L1|G|1172
8RXH|1|L1|G|1173
8RXH|1|L1|G|1174
*
8RXH|1|L1|C|1198
8RXH|1|L1|G|1199
8RXH|1|L1|A|1200
8RXH|1|L1|U|1201
8RXH|1|L1|G|1202
8RXH|1|L1|C|1203
*
8RXH|1|L1|G|1214
8RXH|1|L1|C|1215
8RXH|1|L1|U|1216
8RXH|1|L1|U|1217
8RXH|1|L1|A|1218
*
8RXH|1|L1|U|1408
8RXH|1|L1|U|1409
*
8RXH|1|L1|A|1454
8RXH|1|L1|U|1455
8RXH|1|L1|G|1456
8RXH|1|L1|U|1457
8RXH|1|L1|A|1458
8RXH|1|L1|G|1459
Current chains
- Chain L1
- LSUa_rRNA_chain_1
Nearby chains
- Chain L2
- Large subunit ribosomal RNA; LSU rRNA
- Chain L8
- 5S ribosomal RNA; 5S rRNA
- Chain LI
- Putative 60S ribosomal protein L13
- Chain LL
- Putative 60S ribosomal protein L27A/L29
- Chain LP
- 60S ribosomal protein L18
- Chain LS
- Putative 60S ribosomal protein L21
- Chain Lb
- 60S ribosomal protein L29
- Chain Lc
- Putative 60S ribosomal protein L7
- Chain Lf
- 60S ribosomal protein L32
- Chain Lg
- Putative ribosomal protein l35a
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