J7_8UPR_001

3D structure

PDB id

8UPR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation coupled complex class A (TTC-A) containing RfaH bound to ops signal, mRNA with a 21 nt long spacer, and fMet-tRNAs in E-site and P-site of the ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.3 Å

Loop

Sequence

CGACUAAG*UACAAGC*GAACUC*GUAC*GCGCUG*CC*GG

Length

35 nucleotides

Bulged bases

8UPR|1|a|C|2021

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8UPR|1|a|C|8
8UPR|1|a|G|9
8UPR|1|a|A|10
8UPR|1|a|C|11
8UPR|1|a|U|12
8UPR|1|a|A|13
8UPR|1|a|A|14
8UPR|1|a|G|15
*
8UPR|1|a|U|525
8UPR|1|a|A|526
8UPR|1|a|C|527
8UPR|1|a|A|528
8UPR|1|a|A|529
8UPR|1|a|G|530
8UPR|1|a|C|531
*
8UPR|1|a|G|2018
8UPR|1|a|A|2019
8UPR|1|a|A|2020
8UPR|1|a|C|2021
8UPR|1|a|U|2022
8UPR|1|a|C|2023
*
8UPR|1|a|G|2040
8UPR|1|a|U|2041
8UPR|1|a|A|2042
8UPR|1|a|C|2043
*
8UPR|1|a|G|2625
8UPR|1|a|C|2626
8UPR|1|a|G|2627
8UPR|1|a|C|2628
8UPR|1|a|U|2629
8UPR|1|a|G|2630
*
8UPR|1|a|C|2788
8UPR|1|a|C|2789
*
8UPR|1|a|G|2894
8UPR|1|a|G|2895

Current chains

Chain a

23S rRNA

Nearby chains

Chain 1

50S ribosomal protein L22

Chain i

50S ribosomal protein L32

Chain j

50S ribosomal protein L3

Chain s

50S ribosomal protein L13

Chain z

50S ribosomal protein L20