J7_8UQM_001

3D structure

PDB id

8UQM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation coupled complex class B (TTC-B) containing RfaH in loaded state, NusA, mRNA with a 24 nt long spacer, and fMet-tRNAs in E-site and P-site of the ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.3 Å

Loop

Sequence

CGACUAAG*UACAAGC*GAACUC*GUAC*GCGCUG*CC*GG

Length

35 nucleotides

Bulged bases

8UQM|1|a|C|2021

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8UQM|1|a|C|8
8UQM|1|a|G|9
8UQM|1|a|A|10
8UQM|1|a|C|11
8UQM|1|a|U|12
8UQM|1|a|A|13
8UQM|1|a|A|14
8UQM|1|a|G|15
*
8UQM|1|a|U|525
8UQM|1|a|A|526
8UQM|1|a|C|527
8UQM|1|a|A|528
8UQM|1|a|A|529
8UQM|1|a|G|530
8UQM|1|a|C|531
*
8UQM|1|a|G|2018
8UQM|1|a|A|2019
8UQM|1|a|A|2020
8UQM|1|a|C|2021
8UQM|1|a|U|2022
8UQM|1|a|C|2023
*
8UQM|1|a|G|2040
8UQM|1|a|U|2041
8UQM|1|a|A|2042
8UQM|1|a|C|2043
*
8UQM|1|a|G|2625
8UQM|1|a|C|2626
8UQM|1|a|G|2627
8UQM|1|a|C|2628
8UQM|1|a|U|2629
8UQM|1|a|G|2630
*
8UQM|1|a|C|2788
8UQM|1|a|C|2789
*
8UQM|1|a|G|2894
8UQM|1|a|G|2895

Current chains

Chain a

23S rRNA

Nearby chains

Chain 1

50S ribosomal protein L22

Chain i

50S ribosomal protein L32

Chain j

50S ribosomal protein L3

Chain s

50S ribosomal protein L13

Chain z

50S ribosomal protein L20