J7_8UQM_002

3D structure

PDB id

8UQM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation coupled complex class B (TTC-B) containing RfaH in loaded state, NusA, mRNA with a 24 nt long spacer, and fMet-tRNAs in E-site and P-site of the ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.3 Å

Loop

Sequence

CGAAAG*CGCC*GAGACAC*GAAGAG*CAGAC*GC*GGGUAG

Length

36 nucleotides

Bulged bases

8UQM|1|a|A|945

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8UQM|1|a|C|817
8UQM|1|a|G|818
8UQM|1|a|A|819
8UQM|1|a|A|820
8UQM|1|a|A|821
8UQM|1|a|G|822
*
8UQM|1|a|C|835
8UQM|1|a|G|836
8UQM|1|a|C|837
8UQM|1|a|C|838
*
8UQM|1|a|G|940
8UQM|1|a|A|941
8UQM|1|a|G|942
8UQM|1|a|A|943
8UQM|1|a|C|944
8UQM|1|a|A|945
8UQM|1|a|C|946
*
8UQM|1|a|G|971
8UQM|1|a|A|972
8UQM|1|a|A|973
8UQM|1|a|G|974
8UQM|1|a|A|975
8UQM|1|a|G|976
*
8UQM|1|a|C|987
8UQM|1|a|A|988
8UQM|1|a|G|989
8UQM|1|a|A|990
8UQM|1|a|C|991
*
8UQM|1|a|G|1163
8UQM|1|a|C|1164
*
8UQM|1|a|G|1185
8UQM|1|a|G|1186
8UQM|1|a|G|1187
8UQM|1|a|U|1188
8UQM|1|a|A|1189
8UQM|1|a|G|1190

Current chains

Chain a

23S rRNA

Nearby chains

Chain 0

Ribosomal protein L21

Chain d

5S ribosomal RNA; 5S rRNA

Chain f

50S ribosomal protein L30

Chain o

50S ribosomal protein L35

Chain u

50S ribosomal protein L15

Chain z

50S ribosomal protein L20