J7_8UR0_002

3D structure

PDB id

8UR0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation coupled complex class B (TTC-B) containing RfaH bound to ops signal, NusA, mRNA with a 24 nt long spacer, and fMet-tRNAs in E-site and P-site of the ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CGAAAG*CGCC*GAGACAC*GAAGAG*CAGAC*GC*GGGUAG

Length

36 nucleotides

Bulged bases

8UR0|1|a|A|945

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8UR0|1|a|C|817
8UR0|1|a|G|818
8UR0|1|a|A|819
8UR0|1|a|A|820
8UR0|1|a|A|821
8UR0|1|a|G|822
*
8UR0|1|a|C|835
8UR0|1|a|G|836
8UR0|1|a|C|837
8UR0|1|a|C|838
*
8UR0|1|a|G|940
8UR0|1|a|A|941
8UR0|1|a|G|942
8UR0|1|a|A|943
8UR0|1|a|C|944
8UR0|1|a|A|945
8UR0|1|a|C|946
*
8UR0|1|a|G|971
8UR0|1|a|A|972
8UR0|1|a|A|973
8UR0|1|a|G|974
8UR0|1|a|A|975
8UR0|1|a|G|976
*
8UR0|1|a|C|987
8UR0|1|a|A|988
8UR0|1|a|G|989
8UR0|1|a|A|990
8UR0|1|a|C|991
*
8UR0|1|a|G|1163
8UR0|1|a|C|1164
*
8UR0|1|a|G|1185
8UR0|1|a|G|1186
8UR0|1|a|G|1187
8UR0|1|a|U|1188
8UR0|1|a|A|1189
8UR0|1|a|G|1190

Current chains

Chain a

23S rRNA

Nearby chains

Chain 0

Ribosomal protein L21

Chain d

5S ribosomal RNA; 5S rRNA

Chain f

50S ribosomal protein L30

Chain o

50S ribosomal protein L35

Chain u

50S ribosomal protein L15

Chain z

50S ribosomal protein L20