J7_8URH_002

3D structure

PDB id

8URH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation coupled complex class B (TTC-B) containing RfaH bound to ops signal, mRNA with a 27 nt long spacer, and fMet-tRNAs in E-site and P-site of the ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.7 Å

Loop

Sequence

CGAAAG*CGCC*GAGACAC*GAAGAG*CAGAC*GC*GGGUAG

Length

36 nucleotides

Bulged bases

8URH|1|a|A|945

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8URH|1|a|C|817
8URH|1|a|G|818
8URH|1|a|A|819
8URH|1|a|A|820
8URH|1|a|A|821
8URH|1|a|G|822
*
8URH|1|a|C|835
8URH|1|a|G|836
8URH|1|a|C|837
8URH|1|a|C|838
*
8URH|1|a|G|940
8URH|1|a|A|941
8URH|1|a|G|942
8URH|1|a|A|943
8URH|1|a|C|944
8URH|1|a|A|945
8URH|1|a|C|946
*
8URH|1|a|G|971
8URH|1|a|A|972
8URH|1|a|A|973
8URH|1|a|G|974
8URH|1|a|A|975
8URH|1|a|G|976
*
8URH|1|a|C|987
8URH|1|a|A|988
8URH|1|a|G|989
8URH|1|a|A|990
8URH|1|a|C|991
*
8URH|1|a|G|1163
8URH|1|a|C|1164
*
8URH|1|a|G|1185
8URH|1|a|G|1186
8URH|1|a|G|1187
8URH|1|a|U|1188
8URH|1|a|A|1189
8URH|1|a|G|1190

Current chains

Chain a

23S rRNA

Nearby chains

Chain 0

Ribosomal protein L21

Chain d

5S ribosomal RNA; 5S rRNA

Chain f

50S ribosomal protein L30

Chain o

50S ribosomal protein L35

Chain u

50S ribosomal protein L15

Chain z

50S ribosomal protein L20