J7_8URI_002

3D structure

PDB id

8URI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation coupled complex class B (TTC-B) containing RfaH bound to ops signal, NusA, mRNA with a 27 nt long spacer, and fMet-tRNAs in E-site and P-site of the ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.3 Å

Loop

Sequence

CGAAAG*CGCC*GAGACAC*GAAGAG*CAGAC*GC*GGGUAG

Length

36 nucleotides

Bulged bases

8URI|1|a|A|945

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8URI|1|a|C|817
8URI|1|a|G|818
8URI|1|a|A|819
8URI|1|a|A|820
8URI|1|a|A|821
8URI|1|a|G|822
*
8URI|1|a|C|835
8URI|1|a|G|836
8URI|1|a|C|837
8URI|1|a|C|838
*
8URI|1|a|G|940
8URI|1|a|A|941
8URI|1|a|G|942
8URI|1|a|A|943
8URI|1|a|C|944
8URI|1|a|A|945
8URI|1|a|C|946
*
8URI|1|a|G|971
8URI|1|a|A|972
8URI|1|a|A|973
8URI|1|a|G|974
8URI|1|a|A|975
8URI|1|a|G|976
*
8URI|1|a|C|987
8URI|1|a|A|988
8URI|1|a|G|989
8URI|1|a|A|990
8URI|1|a|C|991
*
8URI|1|a|G|1163
8URI|1|a|C|1164
*
8URI|1|a|G|1185
8URI|1|a|G|1186
8URI|1|a|G|1187
8URI|1|a|U|1188
8URI|1|a|A|1189
8URI|1|a|G|1190

Current chains

Chain a

23S rRNA

Nearby chains

Chain 0

Ribosomal protein L21

Chain d

5S ribosomal RNA; 5S rRNA

Chain f

50S ribosomal protein L30

Chain o

50S ribosomal protein L35

Chain u

50S ribosomal protein L15

Chain z

50S ribosomal protein L20