J7_8URX_002

3D structure

PDB id

8URX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation coupled complex class B (TTC-B) containing RfaH bound to ops signal, mRNA with a 30 nt long spacer, and fMet-tRNAs in E-site and P-site of the ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

6.6 Å

Loop

Sequence

CGAAAG*CGCC*GAGACAC*GAAGAG*CAGAC*GC*GGGUAG

Length

36 nucleotides

Bulged bases

8URX|1|a|A|945

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8URX|1|a|C|817
8URX|1|a|G|818
8URX|1|a|A|819
8URX|1|a|A|820
8URX|1|a|A|821
8URX|1|a|G|822
*
8URX|1|a|C|835
8URX|1|a|G|836
8URX|1|a|C|837
8URX|1|a|C|838
*
8URX|1|a|G|940
8URX|1|a|A|941
8URX|1|a|G|942
8URX|1|a|A|943
8URX|1|a|C|944
8URX|1|a|A|945
8URX|1|a|C|946
*
8URX|1|a|G|971
8URX|1|a|A|972
8URX|1|a|A|973
8URX|1|a|G|974
8URX|1|a|A|975
8URX|1|a|G|976
*
8URX|1|a|C|987
8URX|1|a|A|988
8URX|1|a|G|989
8URX|1|a|A|990
8URX|1|a|C|991
*
8URX|1|a|G|1163
8URX|1|a|C|1164
*
8URX|1|a|G|1185
8URX|1|a|G|1186
8URX|1|a|G|1187
8URX|1|a|U|1188
8URX|1|a|A|1189
8URX|1|a|G|1190

Current chains

Chain a

23S rRNA

Nearby chains

Chain 0

Ribosomal protein L21

Chain d

5S ribosomal RNA; 5S rRNA

Chain f

50S ribosomal protein L30

Chain o

50S ribosomal protein L35

Chain u

50S ribosomal protein L15

Chain z

50S ribosomal protein L20