3D structure

PDB id
8UT0 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Eukaryotic 80S ribosome with Reh1, eIF5A and A/P site tRNA
Experimental method
ELECTRON MICROSCOPY
Resolution
3.22 Å

Loop

Sequence
CGAAGU*AG*UGGG*CGAUGC*GAACG*CC*GAGUAG
Length
31 nucleotides
Bulged bases
8UT0|1|A|G|1116
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

8UT0|1|A|C|949
8UT0|1|A|G|950
8UT0|1|A|A|951
8UT0|1|A|A|952
8UT0|1|A|G|953
8UT0|1|A|U|954
*
8UT0|1|A|A|967
8UT0|1|A|G|968
*
8UT0|1|A|U|1114
8UT0|1|A|G|1115
8UT0|1|A|G|1116
8UT0|1|A|G|1117
*
8UT0|1|A|C|1141
8UT0|1|A|G|1142
8UT0|1|A|A|1143
8UT0|1|A|U|1144
8UT0|1|A|G|1145
8UT0|1|A|C|1146
*
8UT0|1|A|G|1157
8UT0|1|A|A|1158
8UT0|1|A|A|1159
8UT0|1|A|C|1160
8UT0|1|A|G|1161
*
8UT0|1|A|C|1338
8UT0|1|A|C|1339
*
8UT0|1|A|G|1365
8UT0|1|A|A|1366
8UT0|1|A|G|1367
8UT0|1|A|U|1368
8UT0|1|A|A|1369
8UT0|1|A|G|1370

Current chains

Chain A
25S rRNA

Nearby chains

Chain B
5S ribosomal RNA; 5S rRNA
Chain LF
60S ribosomal protein L4-A
Chain LI
60S ribosomal protein L7-A
Chain LN
60S ribosomal protein L13-A
Chain LS
60S ribosomal protein L18-A
Chain LV
60S ribosomal protein L21-A
Chain Lc
60S ribosomal protein L28
Chain Ld
60S ribosomal protein L29
Chain Lg
60S ribosomal protein L32
Chain Lh
60S ribosomal protein L33-A

Coloring options:

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