J7_8VFT_001
3D structure
- PDB id
- 8VFT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Translating 80S rabbit ribosome stalled by emetine with eEF2
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- CAAAGU*AG*UGGG*CGCUGC*GAACG*CC*GAGUAG
- Length
- 31 nucleotides
- Bulged bases
- 8VFT|1|5|G|1854
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8VFT|1|5|C|1666
8VFT|1|5|A|1667
8VFT|1|5|A|1668
8VFT|1|5|A|1669
8VFT|1|5|G|1670
8VFT|1|5|U|1671
*
8VFT|1|5|A|1684
8VFT|1|5|G|1685
*
8VFT|1|5|U|1852
8VFT|1|5|G|1853
8VFT|1|5|G|1854
8VFT|1|5|G|1855
*
8VFT|1|5|C|1879
8VFT|1|5|G|1880
8VFT|1|5|C|1881
8VFT|1|5|U|1882
8VFT|1|5|G|1883
8VFT|1|5|C|1884
*
8VFT|1|5|G|1895
8VFT|1|5|A|1896
8VFT|1|5|A|1897
8VFT|1|5|C|1898
8VFT|1|5|G|1899
*
8VFT|1|5|C|2077
8VFT|1|5|C|2078
*
8VFT|1|5|G|2278
8VFT|1|5|A|2279
8VFT|1|5|G|2280
8VFT|1|5|U|2281
8VFT|1|5|A|2282
8VFT|1|5|G|2283
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain 7
- 5S ribosomal RNA; 5S rRNA
- Chain C
- uL4
- Chain F
- uL30
- Chain L
- eL13
- Chain Q
- eL18
- Chain T
- eL21
- Chain a
- uL15
- Chain b
- eL29
- Chain e
- eL32
- Chain f
- eL33
Coloring options: