J7_8VS9_001

3D structure

PDB id

8VS9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Endogenous trans-translation complex with tmRNA*SmpB in the P site and alanyl-tRNA in the A site and deacyl-tRNA in the E site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CGACUAAG*UACAAGC*GAACUC*GUAC*GCGCUG*CC*GG

Length

35 nucleotides

Bulged bases

8VS9|1|23S|C|2021

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VS9|1|23S|C|8
8VS9|1|23S|G|9
8VS9|1|23S|A|10
8VS9|1|23S|C|11
8VS9|1|23S|U|12
8VS9|1|23S|A|13
8VS9|1|23S|A|14
8VS9|1|23S|G|15
*
8VS9|1|23S|U|525
8VS9|1|23S|A|526
8VS9|1|23S|C|527
8VS9|1|23S|A|528
8VS9|1|23S|A|529
8VS9|1|23S|G|530
8VS9|1|23S|C|531
*
8VS9|1|23S|G|2018
8VS9|1|23S|A|2019
8VS9|1|23S|A|2020
8VS9|1|23S|C|2021
8VS9|1|23S|U|2022
8VS9|1|23S|C|2023
*
8VS9|1|23S|G|2040
8VS9|1|23S|U|2041
8VS9|1|23S|A|2042
8VS9|1|23S|C|2043
*
8VS9|1|23S|G|2625
8VS9|1|23S|C|2626
8VS9|1|23S|G|2627
8VS9|1|23S|C|2628
8VS9|1|23S|U|2629
8VS9|1|23S|G|2630
*
8VS9|1|23S|C|2788
8VS9|1|23S|C|2789
*
8VS9|1|23S|G|2894
8VS9|1|23S|G|2895

Current chains

Chain 23S

23S ribosomal RNA

Nearby chains

Chain L03

50S ribosomal protein L3

Chain L13

50S ribosomal protein L13

Chain L20

50S ribosomal protein L20

Chain L22

50S ribosomal protein L22

Chain L32

50S ribosomal protein L32