J7_8VS9_002

3D structure

PDB id

8VS9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Endogenous trans-translation complex with tmRNA*SmpB in the P site and alanyl-tRNA in the A site and deacyl-tRNA in the E site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CGAAAG*CGC*GACAC*GAAGAG*CAGAC*GC*GGGUAG

Length

33 nucleotides

Bulged bases

8VS9|1|23S|A|945

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VS9|1|23S|C|817
8VS9|1|23S|G|818
8VS9|1|23S|A|819
8VS9|1|23S|A|820
8VS9|1|23S|A|821
8VS9|1|23S|G|822
*
8VS9|1|23S|C|835
8VS9|1|23S|G|836
8VS9|1|23S|C|837
*
8VS9|1|23S|G|942
8VS9|1|23S|A|943
8VS9|1|23S|C|944
8VS9|1|23S|A|945
8VS9|1|23S|C|946
*
8VS9|1|23S|G|971
8VS9|1|23S|A|972
8VS9|1|23S|A|973
8VS9|1|23S|G|974
8VS9|1|23S|A|975
8VS9|1|23S|G|976
*
8VS9|1|23S|C|987
8VS9|1|23S|A|988
8VS9|1|23S|G|989
8VS9|1|23S|A|990
8VS9|1|23S|C|991
*
8VS9|1|23S|G|1163
8VS9|1|23S|C|1164
*
8VS9|1|23S|G|1185
8VS9|1|23S|G|1186
8VS9|1|23S|G|1187
8VS9|1|23S|U|1188
8VS9|1|23S|A|1189
8VS9|1|23S|G|1190

Current chains

Chain 23S

23S ribosomal RNA

Nearby chains

Chain 5S

5S ribosomal RNA; 5S rRNA

Chain L15

50S ribosomal protein L15

Chain L20

50S ribosomal protein L20

Chain L21

Ribosomal protein L21

Chain L30

Large ribosomal subunit protein uL30

Chain L35

50S ribosomal protein L35