J7_8VVV_001
3D structure
- PDB id
- 8VVV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian ribosomes bound to Anisomycin in the nonrotated conformation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CAAAGU*AG*UGGG*CGCU(OMG)C*GAACG*CC*GAGUAG
- Length
- 31 nucleotides
- Bulged bases
- 8VVV|1|5|G|1860
- QA status
- Modified nucleotides: OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8VVV|1|5|C|1672
8VVV|1|5|A|1673
8VVV|1|5|A|1674
8VVV|1|5|A|1675
8VVV|1|5|G|1676
8VVV|1|5|U|1677
*
8VVV|1|5|A|1690
8VVV|1|5|G|1691
*
8VVV|1|5|U|1858
8VVV|1|5|G|1859
8VVV|1|5|G|1860
8VVV|1|5|G|1861
*
8VVV|1|5|C|1885
8VVV|1|5|G|1886
8VVV|1|5|C|1887
8VVV|1|5|U|1888
8VVV|1|5|OMG|1889
8VVV|1|5|C|1890
*
8VVV|1|5|G|1901
8VVV|1|5|A|1902
8VVV|1|5|A|1903
8VVV|1|5|C|1904
8VVV|1|5|G|1905
*
8VVV|1|5|C|2083
8VVV|1|5|C|2084
*
8VVV|1|5|G|2284
8VVV|1|5|A|2285
8VVV|1|5|G|2286
8VVV|1|5|U|2287
8VVV|1|5|A|2288
8VVV|1|5|G|2289
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain 7
- 5S ribosomal RNA; 5S rRNA
- Chain C
- uL4
- Chain F
- uL30
- Chain L
- eL13
- Chain Q
- eL18
- Chain T
- eL21
- Chain a
- uL15
- Chain b
- eL29
- Chain e
- eL32
- Chain f
- eL33
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