J7_8YDG_001
3D structure
- PDB id
- 8YDG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E.coli transcription translation coupling complex in TTC-B state 3 (subclass2) containing mRNA with 39-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.1 Å
Loop
- Sequence
- CGACUAAG*UACAAGC*GAACUC*GUAC*GCGCUG*CC*GG
- Length
- 35 nucleotides
- Bulged bases
- 8YDG|1|1|C|2021
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8YDG|1|1|C|8
8YDG|1|1|G|9
8YDG|1|1|A|10
8YDG|1|1|C|11
8YDG|1|1|U|12
8YDG|1|1|A|13
8YDG|1|1|A|14
8YDG|1|1|G|15
*
8YDG|1|1|U|525
8YDG|1|1|A|526
8YDG|1|1|C|527
8YDG|1|1|A|528
8YDG|1|1|A|529
8YDG|1|1|G|530
8YDG|1|1|C|531
*
8YDG|1|1|G|2018
8YDG|1|1|A|2019
8YDG|1|1|A|2020
8YDG|1|1|C|2021
8YDG|1|1|U|2022
8YDG|1|1|C|2023
*
8YDG|1|1|G|2040
8YDG|1|1|U|2041
8YDG|1|1|A|2042
8YDG|1|1|C|2043
*
8YDG|1|1|G|2625
8YDG|1|1|C|2626
8YDG|1|1|G|2627
8YDG|1|1|C|2628
8YDG|1|1|U|2629
8YDG|1|1|G|2630
*
8YDG|1|1|C|2788
8YDG|1|1|C|2789
*
8YDG|1|1|G|2894
8YDG|1|1|G|2895
Current chains
- Chain 1
- 23S rRNA
Nearby chains
- Chain B
- 50S ribosomal protein L32
- Chain c
- 50S ribosomal protein L3
- Chain j
- 50S ribosomal protein L13
- Chain q
- 50S ribosomal protein L20
- Chain s
- 50S ribosomal protein L22
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