J7_8ZHC_001
3D structure
- PDB id
- 8ZHC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- pre-frameshift complex of yeast 80S ribosome with eRF1 and mRNA of WNV
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.3 Å
Loop
- Sequence
- CGAAGU*AG*UGGG*CGAUGC*GAACG*CC*GAGUAG
- Length
- 31 nucleotides
- Bulged bases
- 8ZHC|1|LA|G|1115
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8ZHC|1|LA|C|948
8ZHC|1|LA|G|949
8ZHC|1|LA|A|950
8ZHC|1|LA|A|951
8ZHC|1|LA|G|952
8ZHC|1|LA|U|953
*
8ZHC|1|LA|A|966
8ZHC|1|LA|G|967
*
8ZHC|1|LA|U|1113
8ZHC|1|LA|G|1114
8ZHC|1|LA|G|1115
8ZHC|1|LA|G|1116
*
8ZHC|1|LA|C|1140
8ZHC|1|LA|G|1141
8ZHC|1|LA|A|1142
8ZHC|1|LA|U|1143
8ZHC|1|LA|G|1144
8ZHC|1|LA|C|1145
*
8ZHC|1|LA|G|1156
8ZHC|1|LA|A|1157
8ZHC|1|LA|A|1158
8ZHC|1|LA|C|1159
8ZHC|1|LA|G|1160
*
8ZHC|1|LA|C|1337
8ZHC|1|LA|C|1338
*
8ZHC|1|LA|G|1364
8ZHC|1|LA|A|1365
8ZHC|1|LA|G|1366
8ZHC|1|LA|U|1367
8ZHC|1|LA|A|1368
8ZHC|1|LA|G|1369
Current chains
- Chain LA
- 25S rRNA (3393-MER)
Nearby chains
- Chain LB
- 5S ribosomal RNA; 5S rRNA
- Chain LF
- Large ribosomal subunit protein uL4A
- Chain LI
- Large ribosomal subunit protein uL30A
- Chain LN
- Large ribosomal subunit protein eL13A
- Chain LS
- Large ribosomal subunit protein eL18A
- Chain LV
- Large ribosomal subunit protein eL21A
- Chain Lc
- Large ribosomal subunit protein uL15
- Chain Ld
- Large ribosomal subunit protein eL29
- Chain Lg
- Large ribosomal subunit protein eL32
- Chain Lh
- Large ribosomal subunit protein eL33A
Coloring options: