J7_9AXU_001
3D structure
- PDB id
- 9AXU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Non-translating S. pombe ribosome large subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.94 Å
Loop
- Sequence
- CGAAGU*AG*UGGG*CGAUGC*GAACG*CC*GAGUAG
- Length
- 31 nucleotides
- Bulged bases
- 9AXU|1|2|G|1147
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J7_21233.6
- Basepair signature
- cWW-tSH-tHW-cSH-tHH-tHS-F-cWW-cWW-cWW-cWW-F-tSH-cWW-F-F-cWW-F
- Number of instances in this motif group
- 4
Unit IDs
9AXU|1|2|C|981
9AXU|1|2|G|982
9AXU|1|2|A|983
9AXU|1|2|A|984
9AXU|1|2|G|985
9AXU|1|2|U|986
*
9AXU|1|2|A|999
9AXU|1|2|G|1000
*
9AXU|1|2|U|1145
9AXU|1|2|G|1146
9AXU|1|2|G|1147
9AXU|1|2|G|1148
*
9AXU|1|2|C|1172
9AXU|1|2|G|1173
9AXU|1|2|A|1174
9AXU|1|2|U|1175
9AXU|1|2|G|1176
9AXU|1|2|C|1177
*
9AXU|1|2|G|1188
9AXU|1|2|A|1189
9AXU|1|2|A|1190
9AXU|1|2|C|1191
9AXU|1|2|G|1192
*
9AXU|1|2|C|1369
9AXU|1|2|C|1370
*
9AXU|1|2|G|1399
9AXU|1|2|A|1400
9AXU|1|2|G|1401
9AXU|1|2|U|1402
9AXU|1|2|A|1403
9AXU|1|2|G|1404
Current chains
- Chain 2
- 28S ribosomal RNA
Nearby chains
- Chain 3
- 5S ribosomal RNA; 5S rRNA
- Chain P
- Large ribosomal subunit protein uL4A
- Chain S
- Large ribosomal subunit protein uL30C
- Chain X
- Large ribosomal subunit protein eL13
- Chain c
- Large ribosomal subunit protein eL18B
- Chain f
- Large ribosomal subunit protein eL21B
- Chain m
- Large ribosomal subunit protein uL15B
- Chain n
- Large ribosomal subunit protein eL29
- Chain q
- Large ribosomal subunit protein eL32A
- Chain r
- Large ribosomal subunit protein eL33A
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