J7_9B50_001

3D structure

PDB id

9B50 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome complex (unmethylated 16S A1408 + arbekacin)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CGACUAAG*UACAAGC*GAACUC*GUAC*GCGCUG*CC*GG

Length

35 nucleotides

Bulged bases

9B50|1|BA|C|2021

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9B50|1|BA|C|8
9B50|1|BA|G|9
9B50|1|BA|A|10
9B50|1|BA|C|11
9B50|1|BA|U|12
9B50|1|BA|A|13
9B50|1|BA|A|14
9B50|1|BA|G|15
*
9B50|1|BA|U|525
9B50|1|BA|A|526
9B50|1|BA|C|527
9B50|1|BA|A|528
9B50|1|BA|A|529
9B50|1|BA|G|530
9B50|1|BA|C|531
*
9B50|1|BA|G|2018
9B50|1|BA|A|2019
9B50|1|BA|A|2020
9B50|1|BA|C|2021
9B50|1|BA|U|2022
9B50|1|BA|C|2023
*
9B50|1|BA|G|2040
9B50|1|BA|U|2041
9B50|1|BA|A|2042
9B50|1|BA|C|2043
*
9B50|1|BA|G|2625
9B50|1|BA|C|2626
9B50|1|BA|G|2627
9B50|1|BA|C|2628
9B50|1|BA|U|2629
9B50|1|BA|G|2630
*
9B50|1|BA|C|2788
9B50|1|BA|C|2789
*
9B50|1|BA|G|2894
9B50|1|BA|G|2895

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain B0

50S ribosomal protein L32

Chain BD

50S ribosomal protein L3

Chain BJ

50S ribosomal protein L13

Chain BQ

50S ribosomal protein L20

Chain BS

50S ribosomal protein L22