3D structure

PDB id
9B50 (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 70S ribosome complex (unmethylated 16S A1408 + arbekacin)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.7 Å

Loop

Sequence
CGAAAG*CGCC*GAGACAC*GAAGAG*CAGAC*GC*GGGUAG
Length
36 nucleotides
Bulged bases
9B50|1|BA|A|945
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

9B50|1|BA|C|817
9B50|1|BA|G|818
9B50|1|BA|A|819
9B50|1|BA|A|820
9B50|1|BA|A|821
9B50|1|BA|G|822
*
9B50|1|BA|C|835
9B50|1|BA|G|836
9B50|1|BA|C|837
9B50|1|BA|C|838
*
9B50|1|BA|G|940
9B50|1|BA|A|941
9B50|1|BA|G|942
9B50|1|BA|A|943
9B50|1|BA|C|944
9B50|1|BA|A|945
9B50|1|BA|C|946
*
9B50|1|BA|G|971
9B50|1|BA|A|972
9B50|1|BA|A|973
9B50|1|BA|G|974
9B50|1|BA|A|975
9B50|1|BA|G|976
*
9B50|1|BA|C|987
9B50|1|BA|A|988
9B50|1|BA|G|989
9B50|1|BA|A|990
9B50|1|BA|C|991
*
9B50|1|BA|G|1163
9B50|1|BA|C|1164
*
9B50|1|BA|G|1185
9B50|1|BA|G|1186
9B50|1|BA|G|1187
9B50|1|BA|U|1188
9B50|1|BA|A|1189
9B50|1|BA|G|1190

Current chains

Chain BA
23S ribosomal RNA

Nearby chains

Chain B3
50S ribosomal protein L35
Chain BB
5S ribosomal RNA
Chain BL
50S ribosomal protein L15
Chain BQ
50S ribosomal protein L20
Chain BR
50S ribosomal protein L21
Chain BZ
50S ribosomal protein L30

Coloring options:

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