J7_9BUP_001
3D structure
- PDB id
- 9BUP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Single particle CryoEM structure of the Pf80S ribosome in non-rotated PRE state (nrt A-P-E)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- CGAAAGA*UCG*UGGG*CGAUGA*UAACG*CC*GAGUAG
- Length
- 33 nucleotides
- Bulged bases
- 9BUP|1|AA|G|1244
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9BUP|1|AA|C|1068
9BUP|1|AA|G|1069
9BUP|1|AA|A|1070
9BUP|1|AA|A|1071
9BUP|1|AA|A|1072
9BUP|1|AA|G|1073
9BUP|1|AA|A|1074
*
9BUP|1|AA|U|1085
9BUP|1|AA|C|1086
9BUP|1|AA|G|1087
*
9BUP|1|AA|U|1242
9BUP|1|AA|G|1243
9BUP|1|AA|G|1244
9BUP|1|AA|G|1245
*
9BUP|1|AA|C|1269
9BUP|1|AA|G|1270
9BUP|1|AA|A|1271
9BUP|1|AA|U|1272
9BUP|1|AA|G|1273
9BUP|1|AA|A|1274
*
9BUP|1|AA|U|1285
9BUP|1|AA|A|1286
9BUP|1|AA|A|1287
9BUP|1|AA|C|1288
9BUP|1|AA|G|1289
*
9BUP|1|AA|C|1466
9BUP|1|AA|C|1467
*
9BUP|1|AA|G|1514
9BUP|1|AA|A|1515
9BUP|1|AA|G|1516
9BUP|1|AA|U|1517
9BUP|1|AA|A|1518
9BUP|1|AA|G|1519
Current chains
- Chain AA
- 28S ribosomal RNA
Nearby chains
- Chain A4
- 60S ribosomal protein L29
- Chain A5
- 60S ribosomal protein L7
- Chain A8
- 60S ribosomal protein L32
- Chain A9
- 60S ribosomal protein L35ae
- Chain AB
- 5S ribosomal RNA; 5S rRNA
- Chain AF
- 60S ribosomal protein L4
- Chain AL
- 60S ribosomal protein L13
- Chain AO
- 60S ribosomal protein L27a
- Chain AS
- 60S ribosomal protein L18-2
- Chain AV
- 60S ribosomal protein L21
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