J7_9D89_001

3D structure

PDB id

9D89 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosomal subunit in complex with PrAMP rumicidin-2 (focused refinement)

Experimental method

ELECTRON MICROSCOPY

Resolution

1.95 Å

Loop

Sequence

CGACUAAG*UACAAGC*GAACUC*GUAC*GCGCUG*CC*GG

Length

35 nucleotides

Bulged bases

9D89|1|D|C|2025

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9D89|1|D|C|8
9D89|1|D|G|9
9D89|1|D|A|10
9D89|1|D|C|11
9D89|1|D|U|12
9D89|1|D|A|13
9D89|1|D|A|14
9D89|1|D|G|15
*
9D89|1|D|U|525
9D89|1|D|A|526
9D89|1|D|C|527
9D89|1|D|A|528
9D89|1|D|A|529
9D89|1|D|G|530
9D89|1|D|C|531
*
9D89|1|D|G|2022
9D89|1|D|A|2023
9D89|1|D|A|2024
9D89|1|D|C|2025
9D89|1|D|U|2026
9D89|1|D|C|2027
*
9D89|1|D|G|2044
9D89|1|D|U|2045
9D89|1|D|A|2046
9D89|1|D|C|2047
*
9D89|1|D|G|2629
9D89|1|D|C|2630
9D89|1|D|G|2631
9D89|1|D|C|2632
9D89|1|D|U|2633
9D89|1|D|G|2634
*
9D89|1|D|C|2792
9D89|1|D|C|2793
*
9D89|1|D|G|2898
9D89|1|D|G|2899

Current chains

Chain D

23S rRNA

Nearby chains

Chain G

50S ribosomal protein L3

Chain M

50S ribosomal protein L32

Chain i

Large ribosomal subunit protein uL13

Chain p

Large ribosomal subunit protein bL20

Chain r

50S ribosomal protein L22