J7_9D89_002
3D structure
- PDB id
- 9D89 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 50S ribosomal subunit in complex with PrAMP rumicidin-2 (focused refinement)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.95 Å
Loop
- Sequence
- CGAAAG*CGC*GACAC*GAAGAG*CAGAC*GC*GGGUAG
- Length
- 33 nucleotides
- Bulged bases
- 9D89|1|D|A|947
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9D89|1|D|C|819
9D89|1|D|G|820
9D89|1|D|A|821
9D89|1|D|A|822
9D89|1|D|A|823
9D89|1|D|G|824
*
9D89|1|D|C|837
9D89|1|D|G|838
9D89|1|D|C|839
*
9D89|1|D|G|944
9D89|1|D|A|945
9D89|1|D|C|946
9D89|1|D|A|947
9D89|1|D|C|948
*
9D89|1|D|G|973
9D89|1|D|A|974
9D89|1|D|A|975
9D89|1|D|G|976
9D89|1|D|A|977
9D89|1|D|G|978
*
9D89|1|D|C|989
9D89|1|D|A|990
9D89|1|D|G|991
9D89|1|D|A|992
9D89|1|D|C|993
*
9D89|1|D|G|1165
9D89|1|D|C|1166
*
9D89|1|D|G|1187
9D89|1|D|G|1188
9D89|1|D|G|1189
9D89|1|D|U|1190
9D89|1|D|A|1191
9D89|1|D|G|1192
Current chains
- Chain D
- 23S rRNA
Nearby chains
- Chain B
- 50S ribosomal protein L35
- Chain E
- 5S ribosomal RNA; 5S rRNA
- Chain I
- 50S ribosomal protein L15
- Chain p
- Large ribosomal subunit protein bL20
- Chain q
- 50S ribosomal protein L21
- Chain y
- 50S ribosomal protein L30
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