J7_9DFE_002

3D structure

PDB id

9DFE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with lasso peptide lariocidin and protein Y at 2.60A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

CGAAAU*AG*UGAG*CGAGCGC*GAGAC*GG*CGGUAG

Length

32 nucleotides

Bulged bases

9DFE|1|1A|A|945, 9DFE|1|1A|C|975

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J7_21233.5

Basepair signature

cWW-tSH-tHW-cSH-tHH-tHS-F-cWW-cWW-cWW-cWW-F-tSH-cWW-tHS-F-cWW

Number of instances in this motif group

3

Unit IDs

9DFE|1|1A|C|817
9DFE|1|1A|G|818
9DFE|1|1A|A|819
9DFE|1|1A|A|820
9DFE|1|1A|A|821
9DFE|1|1A|U|822
*
9DFE|1|1A|A|835
9DFE|1|1A|G|836
*
9DFE|1|1A|U|943
9DFE|1|1A|G|944
9DFE|1|1A|A|945
9DFE|1|1A|G|946
*
9DFE|1|1A|C|971
9DFE|1|1A|G|972
9DFE|1|1A|A|973
9DFE|1|1A|G|974
9DFE|1|1A|C|975
9DFE|1|1A|G|975|||A
9DFE|1|1A|C|976
*
9DFE|1|1A|G|987
9DFE|1|1A|A|988
9DFE|1|1A|G|989
9DFE|1|1A|A|990
9DFE|1|1A|C|991
*
9DFE|1|1A|G|1163
9DFE|1|1A|G|1164
*
9DFE|1|1A|C|1185
9DFE|1|1A|G|1186
9DFE|1|1A|G|1187
9DFE|1|1A|U|1188
9DFE|1|1A|A|1189
9DFE|1|1A|G|1190

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 13

50S ribosomal protein L30

Chain 18

50S ribosomal protein L35

Chain 1B

5S ribosomal RNA; 5S rRNA

Chain 1P

50S ribosomal protein L15

Chain 1U

50S ribosomal protein L20

Chain 1V

50S ribosomal protein L21