J7_9F9S_001
3D structure
- PDB id
- 9F9S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast SDD1 Disome with Mbf1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CGAAGU*AG*UGGG*CGAUGC*GAACG*CC*GAGUAG
- Length
- 31 nucleotides
- Bulged bases
- 9F9S|1|L1|G|1116
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9F9S|1|L1|C|949
9F9S|1|L1|G|950
9F9S|1|L1|A|951
9F9S|1|L1|A|952
9F9S|1|L1|G|953
9F9S|1|L1|U|954
*
9F9S|1|L1|A|967
9F9S|1|L1|G|968
*
9F9S|1|L1|U|1114
9F9S|1|L1|G|1115
9F9S|1|L1|G|1116
9F9S|1|L1|G|1117
*
9F9S|1|L1|C|1141
9F9S|1|L1|G|1142
9F9S|1|L1|A|1143
9F9S|1|L1|U|1144
9F9S|1|L1|G|1145
9F9S|1|L1|C|1146
*
9F9S|1|L1|G|1157
9F9S|1|L1|A|1158
9F9S|1|L1|A|1159
9F9S|1|L1|C|1160
9F9S|1|L1|G|1161
*
9F9S|1|L1|C|1338
9F9S|1|L1|C|1339
*
9F9S|1|L1|G|1365
9F9S|1|L1|A|1366
9F9S|1|L1|G|1367
9F9S|1|L1|U|1368
9F9S|1|L1|A|1369
9F9S|1|L1|G|1370
Current chains
- Chain L1
- Saccharomyces cerevisiae S288C 25S ribosomal RNA (RDN25-1)
Nearby chains
- Chain L3
- 5S ribosomal RNA; 5S rRNA
- Chain LB
- 60S ribosomal protein L7-A
- Chain LG
- 60S ribosomal protein L13-A
- Chain LL
- 60S ribosomal protein L18-A
- Chain LO
- 60S ribosomal protein L21-A
- Chain Ll
- 60S ribosomal protein L33-A
- Chain Lm
- 60S ribosomal protein L32
- Chain Lp
- 60S ribosomal protein L29
- Chain Lq
- 60S ribosomal protein L28
- Chain Ly
- 60S ribosomal protein L4-A
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