J7_9F9S_002
3D structure
- PDB id
- 9F9S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast SDD1 Disome with Mbf1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CGAAGU*AG*UGGG*CGAUGC*GAACG*CC*GAGUAG
- Length
- 31 nucleotides
- Bulged bases
- 9F9S|1|M1|G|1116
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9F9S|1|M1|C|949
9F9S|1|M1|G|950
9F9S|1|M1|A|951
9F9S|1|M1|A|952
9F9S|1|M1|G|953
9F9S|1|M1|U|954
*
9F9S|1|M1|A|967
9F9S|1|M1|G|968
*
9F9S|1|M1|U|1114
9F9S|1|M1|G|1115
9F9S|1|M1|G|1116
9F9S|1|M1|G|1117
*
9F9S|1|M1|C|1141
9F9S|1|M1|G|1142
9F9S|1|M1|A|1143
9F9S|1|M1|U|1144
9F9S|1|M1|G|1145
9F9S|1|M1|C|1146
*
9F9S|1|M1|G|1157
9F9S|1|M1|A|1158
9F9S|1|M1|A|1159
9F9S|1|M1|C|1160
9F9S|1|M1|G|1161
*
9F9S|1|M1|C|1338
9F9S|1|M1|C|1339
*
9F9S|1|M1|G|1365
9F9S|1|M1|A|1366
9F9S|1|M1|G|1367
9F9S|1|M1|U|1368
9F9S|1|M1|A|1369
9F9S|1|M1|G|1370
Current chains
- Chain M1
- Saccharomyces cerevisiae S288C 18S ribosomal RNA (RDN18-1) with modifications
Nearby chains
- Chain M3
- 5S ribosomal RNA; 5S rRNA
- Chain MB
- 60S ribosomal protein L7-A
- Chain MG
- 60S ribosomal protein L13-A
- Chain ML
- 60S ribosomal protein L18-A
- Chain MO
- 60S ribosomal protein L21-A
- Chain Ml
- 60S ribosomal protein L33-A
- Chain Mm
- 60S ribosomal protein L32
- Chain Mp
- 60S ribosomal protein L29
- Chain Mq
- 60S ribosomal protein L28
- Chain My
- 60S ribosomal protein L4-A
Coloring options: