J7_9G8M_001
3D structure
- PDB id
- 9G8M (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- human 80S ribosome bound by a SKI2-exosome complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- CGAAGU*AG*UGGG*CGCUGC*GAACG*CC*GAGUAG
- Length
- 31 nucleotides
- Bulged bases
- 9G8M|1|L5|G|1852
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9G8M|1|L5|C|1666
9G8M|1|L5|G|1667
9G8M|1|L5|A|1668
9G8M|1|L5|A|1669
9G8M|1|L5|G|1670
9G8M|1|L5|U|1671
*
9G8M|1|L5|A|1684
9G8M|1|L5|G|1685
*
9G8M|1|L5|U|1850
9G8M|1|L5|G|1851
9G8M|1|L5|G|1852
9G8M|1|L5|G|1853
*
9G8M|1|L5|C|1877
9G8M|1|L5|G|1878
9G8M|1|L5|C|1879
9G8M|1|L5|U|1880
9G8M|1|L5|G|1881
9G8M|1|L5|C|1882
*
9G8M|1|L5|G|1893
9G8M|1|L5|A|1894
9G8M|1|L5|A|1895
9G8M|1|L5|C|1896
9G8M|1|L5|G|1897
*
9G8M|1|L5|C|2075
9G8M|1|L5|C|2076
*
9G8M|1|L5|G|2276
9G8M|1|L5|A|2277
9G8M|1|L5|G|2278
9G8M|1|L5|U|2279
9G8M|1|L5|A|2280
9G8M|1|L5|G|2281
Current chains
- Chain L5
- 28S ribosomal RNA
Nearby chains
- Chain L7
- 5S ribosomal RNA; 5S rRNA
- Chain LF
- Large ribosomal subunit protein uL30
- Chain LL
- 60S ribosomal protein L13
- Chain LQ
- 60S ribosomal protein L18
- Chain LT
- 60S ribosomal protein L21
- Chain La
- 60S ribosomal protein L27a
- Chain Lb
- 60S ribosomal protein L29
- Chain Le
- 60S ribosomal protein L32
- Chain Lf
- 60S ribosomal protein L35a
Coloring options: