J7_9GFT_001

3D structure

PDB id

9GFT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HrpA-bound E. coli disome, Class I

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGACUAAG*UACAAGC*GAACUC*GUAC*GCGCUG*CC*GG

Length

35 nucleotides

Bulged bases

9GFT|1|AV|U|12, 9GFT|1|AV|C|2021

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9GFT|1|AV|C|8
9GFT|1|AV|G|9
9GFT|1|AV|A|10
9GFT|1|AV|C|11
9GFT|1|AV|U|12
9GFT|1|AV|A|13
9GFT|1|AV|A|14
9GFT|1|AV|G|15
*
9GFT|1|AV|U|525
9GFT|1|AV|A|526
9GFT|1|AV|C|527
9GFT|1|AV|A|528
9GFT|1|AV|A|529
9GFT|1|AV|G|530
9GFT|1|AV|C|531
*
9GFT|1|AV|G|2018
9GFT|1|AV|A|2019
9GFT|1|AV|A|2020
9GFT|1|AV|C|2021
9GFT|1|AV|U|2022
9GFT|1|AV|C|2023
*
9GFT|1|AV|G|2040
9GFT|1|AV|U|2041
9GFT|1|AV|A|2042
9GFT|1|AV|C|2043
*
9GFT|1|AV|G|2625
9GFT|1|AV|C|2626
9GFT|1|AV|G|2627
9GFT|1|AV|C|2628
9GFT|1|AV|U|2629
9GFT|1|AV|G|2630
*
9GFT|1|AV|C|2788
9GFT|1|AV|C|2789
*
9GFT|1|AV|G|2894
9GFT|1|AV|G|2895

Current chains

Chain AV

23S RNA

Nearby chains

Chain AY

50S ribosomal protein L3

Chain Ae

Large ribosomal subunit protein uL13

Chain Al

Large ribosomal subunit protein bL20

Chain An

Large ribosomal subunit protein uL22

Chain Av

Large ribosomal subunit protein bL32