J7_9H3K_001

3D structure

PDB id

9H3K (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S subunit precursor d126_(L29)-/(L22)-

Experimental method

ELECTRON MICROSCOPY

Resolution

6.62 Å

Loop

Sequence

CGACUAAG*UACAAGC*GAACUC*GUAC*GCGCUG*CC*GG

Length

35 nucleotides

Bulged bases

9H3K|1|A|C|2021

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9H3K|1|A|C|8
9H3K|1|A|G|9
9H3K|1|A|A|10
9H3K|1|A|C|11
9H3K|1|A|U|12
9H3K|1|A|A|13
9H3K|1|A|A|14
9H3K|1|A|G|15
*
9H3K|1|A|U|525
9H3K|1|A|A|526
9H3K|1|A|C|527
9H3K|1|A|A|528
9H3K|1|A|A|529
9H3K|1|A|G|530
9H3K|1|A|C|531
*
9H3K|1|A|G|2018
9H3K|1|A|A|2019
9H3K|1|A|A|2020
9H3K|1|A|C|2021
9H3K|1|A|U|2022
9H3K|1|A|C|2023
*
9H3K|1|A|G|2040
9H3K|1|A|U|2041
9H3K|1|A|A|2042
9H3K|1|A|C|2043
*
9H3K|1|A|G|2625
9H3K|1|A|C|2626
9H3K|1|A|G|2627
9H3K|1|A|C|2628
9H3K|1|A|U|2629
9H3K|1|A|G|2630
*
9H3K|1|A|C|2788
9H3K|1|A|C|2789
*
9H3K|1|A|G|2894
9H3K|1|A|G|2895

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain D

Large ribosomal subunit protein uL3

Chain J

Large ribosomal subunit protein uL13

Chain Q

Large ribosomal subunit protein bL20