J7_9H3W_001

3D structure

PDB id

9H3W (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S subunit precursor C-CP_H68

Experimental method

ELECTRON MICROSCOPY

Resolution

5.38 Å

Loop

Sequence

CGACUAAG*UACAAGC*GAACUC*GUAC*GCGCUG*CC*GG

Length

35 nucleotides

Bulged bases

9H3W|1|A|U|12, 9H3W|1|A|C|2021

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9H3W|1|A|C|8
9H3W|1|A|G|9
9H3W|1|A|A|10
9H3W|1|A|C|11
9H3W|1|A|U|12
9H3W|1|A|A|13
9H3W|1|A|A|14
9H3W|1|A|G|15
*
9H3W|1|A|U|525
9H3W|1|A|A|526
9H3W|1|A|C|527
9H3W|1|A|A|528
9H3W|1|A|A|529
9H3W|1|A|G|530
9H3W|1|A|C|531
*
9H3W|1|A|G|2018
9H3W|1|A|A|2019
9H3W|1|A|A|2020
9H3W|1|A|C|2021
9H3W|1|A|U|2022
9H3W|1|A|C|2023
*
9H3W|1|A|G|2040
9H3W|1|A|U|2041
9H3W|1|A|A|2042
9H3W|1|A|C|2043
*
9H3W|1|A|G|2625
9H3W|1|A|C|2626
9H3W|1|A|G|2627
9H3W|1|A|C|2628
9H3W|1|A|U|2629
9H3W|1|A|G|2630
*
9H3W|1|A|C|2788
9H3W|1|A|C|2789
*
9H3W|1|A|G|2894
9H3W|1|A|G|2895

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 0

Large ribosomal subunit protein bL32

Chain D

50S ribosomal protein L3

Chain J

Large ribosomal subunit protein uL13

Chain Q

Large ribosomal subunit protein bL20

Chain S

Large ribosomal subunit protein uL22