J7_9H6I_001
3D structure
- PDB id
- 9H6I (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Arabidopsis thaliana 80S ribosome in complex with P- and E-site tRNAs, mRNA, and thermospermine
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- CGAAGU*AG*UGGG*CGAUGC*GGAAG*CC*G(A2M)GUAG
- Length
- 31 nucleotides
- Bulged bases
- 9H6I|1|A|G|1125
- QA status
- Modified nucleotides: A2M
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9H6I|1|A|C|958
9H6I|1|A|G|959
9H6I|1|A|A|960
9H6I|1|A|A|961
9H6I|1|A|G|962
9H6I|1|A|U|963
*
9H6I|1|A|A|976
9H6I|1|A|G|977
*
9H6I|1|A|U|1123
9H6I|1|A|G|1124
9H6I|1|A|G|1125
9H6I|1|A|G|1126
*
9H6I|1|A|C|1150
9H6I|1|A|G|1151
9H6I|1|A|A|1152
9H6I|1|A|U|1153
9H6I|1|A|G|1154
9H6I|1|A|C|1155
*
9H6I|1|A|G|1166
9H6I|1|A|G|1167
9H6I|1|A|A|1168
9H6I|1|A|A|1169
9H6I|1|A|G|1170
*
9H6I|1|A|C|1348
9H6I|1|A|C|1349
*
9H6I|1|A|G|1375
9H6I|1|A|A2M|1376
9H6I|1|A|G|1377
9H6I|1|A|U|1378
9H6I|1|A|A|1379
9H6I|1|A|G|1380
Current chains
- Chain A
- Ribosomal RNA 25S
Nearby chains
- Chain AG
- Large ribosomal subunit protein eL13z
- Chain AJ
- Large ribosomal subunit protein eL18x
- Chain AM
- Large ribosomal subunit protein eL21z/eL21y
- Chain AQ
- Large ribosomal subunit protein eL28z
- Chain AR
- 60S ribosomal protein L29
- Chain AV
- Large ribosomal subunit protein eL32z
- Chain AW
- Large ribosomal subunit protein eL33y
- Chain BR
- Ribosomal protein L30/L7 family protein
- Chain BT
- Large ribosomal subunit protein uL4z
- Chain C3
- 5S ribosomal RNA; 5S rRNA
- Chain Ha
- Large ribosomal subunit protein uL15x
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