J7_9HA4_001

3D structure

PDB id

9HA4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pooled 50S subunit C-CP_(L22)- precursor states supplemented with Api137

Experimental method

ELECTRON MICROSCOPY

Resolution

4.26 Å

Loop

Sequence

CGACUAAG*UACAAGC*GAACUC*GUAC*GCGCUG*CC*GG

Length

35 nucleotides

Bulged bases

9HA4|1|A|C|2021

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9HA4|1|A|C|8
9HA4|1|A|G|9
9HA4|1|A|A|10
9HA4|1|A|C|11
9HA4|1|A|U|12
9HA4|1|A|A|13
9HA4|1|A|A|14
9HA4|1|A|G|15
*
9HA4|1|A|U|525
9HA4|1|A|A|526
9HA4|1|A|C|527
9HA4|1|A|A|528
9HA4|1|A|A|529
9HA4|1|A|G|530
9HA4|1|A|C|531
*
9HA4|1|A|G|2018
9HA4|1|A|A|2019
9HA4|1|A|A|2020
9HA4|1|A|C|2021
9HA4|1|A|U|2022
9HA4|1|A|C|2023
*
9HA4|1|A|G|2040
9HA4|1|A|U|2041
9HA4|1|A|A|2042
9HA4|1|A|C|2043
*
9HA4|1|A|G|2625
9HA4|1|A|C|2626
9HA4|1|A|G|2627
9HA4|1|A|C|2628
9HA4|1|A|U|2629
9HA4|1|A|G|2630
*
9HA4|1|A|C|2788
9HA4|1|A|C|2789
*
9HA4|1|A|G|2894
9HA4|1|A|G|2895

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L3

Chain J

Large ribosomal subunit protein uL13

Chain Q

Large ribosomal subunit protein bL20