3D structure

PDB id
9HA6 (explore in PDB, NAKB, or RNA 3D Hub)
Description
mature 50S subunit supplemented with Api137
Experimental method
ELECTRON MICROSCOPY
Resolution
3.08 Å

Loop

Sequence
CGACUAAG*UACAAGC*GAACUC*GUAC*GCGCUG*CC*GG
Length
35 nucleotides
Bulged bases
9HA6|1|A|C|2021
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

9HA6|1|A|C|8
9HA6|1|A|G|9
9HA6|1|A|A|10
9HA6|1|A|C|11
9HA6|1|A|U|12
9HA6|1|A|A|13
9HA6|1|A|A|14
9HA6|1|A|G|15
*
9HA6|1|A|U|525
9HA6|1|A|A|526
9HA6|1|A|C|527
9HA6|1|A|A|528
9HA6|1|A|A|529
9HA6|1|A|G|530
9HA6|1|A|C|531
*
9HA6|1|A|G|2018
9HA6|1|A|A|2019
9HA6|1|A|A|2020
9HA6|1|A|C|2021
9HA6|1|A|U|2022
9HA6|1|A|C|2023
*
9HA6|1|A|G|2040
9HA6|1|A|U|2041
9HA6|1|A|A|2042
9HA6|1|A|C|2043
*
9HA6|1|A|G|2625
9HA6|1|A|C|2626
9HA6|1|A|G|2627
9HA6|1|A|C|2628
9HA6|1|A|U|2629
9HA6|1|A|G|2630
*
9HA6|1|A|C|2788
9HA6|1|A|C|2789
*
9HA6|1|A|G|2894
9HA6|1|A|G|2895

Current chains

Chain A
23S ribosomal rRNA

Nearby chains

Chain 0
Large ribosomal subunit protein bL32
Chain D
50S ribosomal protein L3
Chain J
Large ribosomal subunit protein uL13
Chain Q
Large ribosomal subunit protein bL20
Chain S
Large ribosomal subunit protein uL22

Coloring options:

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